[med-svn] [Git][med-team/htslib][master] 2 commits: Update symbols file

Andreas Tille gitlab at salsa.debian.org
Wed Feb 14 12:18:06 UTC 2018 

Andreas Tille pushed to branch master at Debian Med / htslib


Commits:
0eb2a7cd by Andreas Tille at 2018-02-14T13:13:09+01:00
Update symbols file

- - - - -
60702c25 by Andreas Tille at 2018-02-14T13:16:38+01:00
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/libhts2.symbols


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,11 @@
-htslib (1.7-2) UNRELEASED; urgency=medium
+htslib (1.7-2) unstable; urgency=medium
 
   * Move all needed files into htslib-test package
     Closes: #890303
   * Document how to test the package
+  * Update symbols file
 
- -- Andreas Tille <tille at debian.org>  Wed, 14 Feb 2018 09:43:36 +0100
+ -- Andreas Tille <tille at debian.org>  Wed, 14 Feb 2018 13:13:18 +0100
 
 htslib (1.7-1) unstable; urgency=medium
 


=====================================
debian/libhts2.symbols
=====================================
--- a/debian/libhts2.symbols
+++ b/debian/libhts2.symbols
@@ -14,6 +14,7 @@ libhts.so.2 libhts2 #MINVER#
  bam_aux_update_str at Base 1.4.1
  bam_cigar2qlen at Base 1.0
  bam_cigar2rlen at Base 1.0
+ bam_cigar2rqlens at Base 1.7
  bam_construct_seq at Base 1.0
  bam_copy1 at Base 1.0
  bam_destroy1 at Base 1.0
@@ -142,10 +143,12 @@ libhts.so.2 libhts2 #MINVER#
  bcf_sr_set_samples at Base 1.0
  bcf_sr_set_targets at Base 1.0
  bcf_sr_set_threads at Base 1.4.1
+ bcf_sr_sort_add_active at Base 1.7
  bcf_sr_sort_destroy at Base 1.4.1
  bcf_sr_sort_init at Base 1.4.1
  bcf_sr_sort_next at Base 1.4.1
  bcf_sr_sort_remove_reader at Base 1.4.1
+ bcf_sr_sort_set_active at Base 1.7
  bcf_sr_strerror at Base 1.2.1
  bcf_subset at Base 1.0
  bcf_subset_format at Base 1.0
@@ -326,6 +329,7 @@ libhts.so.2 libhts2 #MINVER#
  cram_huffman_encode_store at Base 1.0
  cram_index_build at Base 1.0
  cram_index_free at Base 1.0
+ cram_index_last at Base 1.7
  cram_index_load at Base 1.0
  cram_index_query at Base 1.0
  cram_load_reference at Base 1.0
@@ -403,9 +407,12 @@ libhts.so.2 libhts2 #MINVER#
  hfile_destroy at Base 1.0
  hfile_init at Base 1.0
  hfile_init_fixed at Base 1.4.1
+ hfile_mem_get_buffer at Base 1.7
+ hfile_mem_steal_buffer at Base 1.7
  hfile_oflags at Base 1.0
  hfile_plugin_init_gcs at Base 1.4.1
  hfile_plugin_init_libcurl at Base 1.3.1
+ hfile_plugin_init_mem at Base 1.7
  hfile_plugin_init_net at Base 1.3
  hfile_plugin_init_s3 at Base 1.4.1
  hfile_set_blksize at Base 1.5
@@ -417,6 +424,7 @@ libhts.so.2 libhts2 #MINVER#
  hopen at Base 1.0
  hopen_htsget_redirect at Base 1.6
  hopen_net at Base 1.0
+ hopenv_mem at Base 1.7
  hpeek at Base 1.0
  hputc2 at Base 1.0
  hputs2 at Base 1.0
@@ -454,13 +462,23 @@ libhts.so.2 libhts2 #MINVER#
  hts_idx_seqnames at Base 1.0
  hts_idx_set_meta at Base 1.0
  hts_itr_destroy at Base 1.0
+ hts_itr_multi_bam at Base 1.7
+ hts_itr_multi_cram at Base 1.7
+ hts_itr_multi_destroy at Base 1.7
+ hts_itr_multi_next at Base 1.7
  hts_itr_next at Base 1.0
+ hts_itr_off at Base 1.7
  hts_itr_query at Base 1.0
  hts_itr_querys at Base 1.0
+ hts_itr_regions at Base 1.7
+ hts_json_alloc_token at Base 1.7
  hts_json_fnext at Base 1.4.1
+ hts_json_free_token at Base 1.7
  hts_json_fskip_value at Base 1.4.1
  hts_json_snext at Base 1.4.1
  hts_json_sskip_value at Base 1.4.1
+ hts_json_token_str at Base 1.7
+ hts_json_token_type at Base 1.7
  hts_log at Base 1.5
  hts_lrand48 at Base 1.6
  hts_md5_destroy at Base 1.3
@@ -481,6 +499,7 @@ libhts.so.2 libhts2 #MINVER#
  hts_readlines at Base 1.0
  hts_readlist at Base 1.0
  hts_realloc_or_die at Base 1.4.1
+ hts_reglist_free at Base 1.7
  hts_set_cache_size at Base 1.4.1
  hts_set_fai_filename at Base 1.0
  hts_set_log_level at Base 1.5
@@ -555,20 +574,28 @@ libhts.so.2 libhts2 #MINVER#
  knet_seek at Base 1.0
  kputd at Base 1.4.1
  ks_combsort__off at Base 1.0
+ ks_combsort__off_max at Base 1.7
  ks_combsort_uint16_t at Base 1.4.1
  ks_heapadjust__off at Base 1.0
+ ks_heapadjust__off_max at Base 1.7
  ks_heapadjust_uint16_t at Base 1.4.1
  ks_heapmake__off at Base 1.0
+ ks_heapmake__off_max at Base 1.7
  ks_heapmake_uint16_t at Base 1.4.1
  ks_heapsort__off at Base 1.0
+ ks_heapsort__off_max at Base 1.7
  ks_heapsort_uint16_t at Base 1.4.1
  ks_introsort__off at Base 1.0
+ ks_introsort__off_max at Base 1.7
  ks_introsort_uint16_t at Base 1.4.1
  ks_ksmall__off at Base 1.0
+ ks_ksmall__off_max at Base 1.7
  ks_ksmall_uint16_t at Base 1.4.1
  ks_mergesort__off at Base 1.0
+ ks_mergesort__off_max at Base 1.7
  ks_mergesort_uint16_t at Base 1.4.1
  ks_shuffle__off at Base 1.0
+ ks_shuffle__off_max at Base 1.7
  ks_shuffle_uint16_t at Base 1.4.1
  ksplit_core at Base 1.0
  ksprintf at Base 1.0
@@ -639,6 +666,7 @@ libhts.so.2 libhts2 #MINVER#
  sam_hdr_add at Base 1.0
  sam_hdr_add_PG at Base 1.0
  sam_hdr_add_lines at Base 1.0
+ sam_hdr_change_HD at Base 1.7
  sam_hdr_decr_ref at Base 1.0
  sam_hdr_dump at Base 1.0
  sam_hdr_dup at Base 1.0
@@ -668,6 +696,7 @@ libhts.so.2 libhts2 #MINVER#
  sam_index_load at Base 1.0
  sam_itr_queryi at Base 1.0
  sam_itr_querys at Base 1.0
+ sam_itr_regions at Base 1.7
  sam_open_mode at Base 1.0
  sam_open_mode_opts at Base 1.3
  sam_parse1 at Base 1.0



View it on GitLab: https://salsa.debian.org/med-team/htslib/compare/ede72ab70551f396c3ae143be79d83a652ed7e17...60702c2523a31f6ae27dc88174332963c59acb55

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View it on GitLab: https://salsa.debian.org/med-team/htslib/compare/ede72ab70551f396c3ae143be79d83a652ed7e17...60702c2523a31f6ae27dc88174332963c59acb55
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