[med-svn] [Git][med-team/python-pysam][master] 7 commits: Spelling
Andreas Tille
gitlab at salsa.debian.org
Sat Feb 17 20:57:15 UTC 2018
Andreas Tille pushed to branch master at Debian Med / python-pysam
Commits:
b26a5cb1 by Andreas Tille at 2018-02-17T21:37:46+01:00
Spelling
- - - - -
f5a61b70 by Andreas Tille at 2018-02-17T21:39:13+01:00
Drop removed files from d/copyright
- - - - -
b0e36229 by Andreas Tille at 2018-02-17T21:40:14+01:00
Update copyright
- - - - -
1178ce77 by Andreas Tille at 2018-02-17T21:41:15+01:00
Silence lintian
- - - - -
41efb549 by Andreas Tille at 2018-02-17T21:42:20+01:00
Drop unused lintian override
- - - - -
75367b93 by Andreas Tille at 2018-02-17T21:45:00+01:00
Update lintian overrides
- - - - -
52c8ec10 by Andreas Tille at 2018-02-17T21:56:57+01:00
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/copyright
- debian/patches/execute-linking-tests-only-when-explicitely-reque.patch
- debian/python-pysam-tests.lintian-overrides
- − debian/source/lintian-overrides
- debian/tests/control
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-python-pysam (0.14+ds-1) UNRELEASED; urgency=medium
+python-pysam (0.14+ds-1) unstable; urgency=medium
* New upstream version
* d/rules: Exclude tests using http access
@@ -7,8 +7,10 @@ python-pysam (0.14+ds-1) UNRELEASED; urgency=medium
* debhelper 11
* do not remove samtools/tmp_file.h in clean target
* do not depend from non-existing data file in make test target
+ * Update d/copyright
+ * Update lintian overrides
- -- Andreas Tille <tille at debian.org> Sat, 17 Feb 2018 15:24:34 +0100
+ -- Andreas Tille <tille at debian.org> Sat, 17 Feb 2018 21:45:07 +0100
python-pysam (0.13.0+ds-1) unstable; urgency=medium
=====================================
debian/copyright
=====================================
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,11 +1,11 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pysam
Upstream-Contact: Andreas Heger <andreas.heger at gmail.com>
Source: https://github.com/pysam-developers/pysam
Files-Excluded: htslib/*
Files: *
-Copyright: 2009-2016 Andreas Heger,
+Copyright: 2009-2018 Andreas Heger,
Tildon Grant Belgrad,
Martin Goodson,
Kevin Jacobs <jacobs at bionformed.com>
@@ -14,7 +14,7 @@ License: MIT
Files: bcftools/*
Copyright:
- 2013-2015 Genome Research Ltd.
+ 2013-2018 Genome Research Ltd.
2010-2011 Broad Institute
License: MIT
@@ -39,10 +39,6 @@ Copyright: 2008-2014 Genome Research Ltd.
2012-2013 Peter Cock, The James Hutton Institute
License: MIT
-Files: samtools/kprobaln.c samtools/kprobaln.c.pysam.c samtools/kprobaln.h
-Copyright: 2003-2006, 2008-2010, by Heng Li <lh3lh3 at live.co.uk>
-License: MIT
-
Files: samtools/misc/ace2sam.*
Copyright: 2011 Heng Li
License: MIT
@@ -91,7 +87,7 @@ Copyright:
2015-2016 Afif Elghraoui <afif at debian.org>
2015 Jorge Soares <j.s.soares at gmail.com>
2014-2015 Charles Plessy <plessy at debian.org>
- 2014-2015 Andreas Tille <tille at debian.org>
+ 2014-2018 Andreas Tille <tille at debian.org>
License: MIT
License: BSD-3-clause
=====================================
debian/patches/execute-linking-tests-only-when-explicitely-reque.patch
=====================================
--- a/debian/patches/execute-linking-tests-only-when-explicitely-reque.patch
+++ b/debian/patches/execute-linking-tests-only-when-explicitely-reque.patch
@@ -1,7 +1,7 @@
From: Andreas Heger <andreas.heger at gmail.com>
Date: Mon, 18 Sep 2017 11:19:28 +0100
Bug-Debian: https://bugs.debian.org/871083
-Subject: execute linking tests only when explicitely
+Subject: execute linking tests only when explicitly
requested via PYSAM_LINKING_TESTS env var. Keep on travis. Fixes #534
---
=====================================
debian/python-pysam-tests.lintian-overrides
=====================================
--- a/debian/python-pysam-tests.lintian-overrides
+++ b/debian/python-pysam-tests.lintian-overrides
@@ -2,4 +2,4 @@
zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf
zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz
# The duplicate is used for testing and needs to be there
-duplicated-compressed-file usr/share/doc/python-pysam/tests/pysam_data/ex1.fa.gz
+duplicated-compressed-file usr/share/doc/python-pysam/tests/tabix_data/example.bed.gz
\ No newline at end of file
=====================================
debian/source/lintian-overrides deleted
=====================================
--- a/debian/source/lintian-overrides
+++ /dev/null
@@ -1,2 +0,0 @@
-# lintian seems to wild guess here from the package name but the test data are for python and python3
-python-pysam source: python-foo-but-no-python3-foo python-pysam-tests
=====================================
debian/tests/control
=====================================
--- a/debian/tests/control
+++ b/debian/tests/control
@@ -1,11 +1,7 @@
Test-Command: make -C tests/pysam_data && make -C tests/cbcf_data && pytest
-Depends:
- @builddeps@,
- python-pysam,
+Depends: @builddeps@, python-pysam
Restrictions: allow-stderr, rw-build-tree
Test-Command: make -C tests/pysam_data && make -C tests/cbcf_data && pytest-3
-Depends:
- @builddeps@,
- python3-pysam,
+Depends: @builddeps@, python3-pysam,
Restrictions: allow-stderr, rw-build-tree
View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced
---
View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced
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