[med-svn] [seqan2] branch experimental updated (b19650a -> 06b4aa4)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch experimental
in repository seqan2.

      from  b19650a   cleanup build flags
      adds  4955144   New upstream version 2.3.2.001platform-issues10-6f85721+dfsg
      adds  9b11d08   Update upstream source from tag 'upstream/2.3.2.001platform-issues10-6f85721+dfsg'
      adds  3792038   hopefully final update from upstream before 2.4
       new  06b4aa4   enable asyncio everywhere & disable parallel building on powerpcspe

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 apps/alf/CMakeLists.txt                            |   2 +-
 apps/alf/alf.cpp                                   |   2 +-
 apps/bs_tools/CMakeLists.txt                       |   2 +-
 apps/dfi/CMakeLists.txt                            |   2 +-
 apps/fiona/CMakeLists.txt                          |   2 +-
 apps/fiona/compute_gain.cpp                        |   6 +-
 apps/fx_tools/CMakeLists.txt                       |   2 +-
 apps/gustaf/CMakeLists.txt                         |   2 +-
 apps/insegt/CMakeLists.txt                         |   2 +-
 apps/mason2/CMakeLists.txt                         |   2 +-
 apps/mason2/mason_genome.cpp                       |   2 +-
 apps/mason2/mason_variator.cpp                     |  10 +-
 apps/micro_razers/CMakeLists.txt                   |   2 +-
 apps/ngs_roi/CMakeLists.txt                        |   4 +-
 apps/pair_align/CMakeLists.txt                     |   2 +-
 apps/param_chooser/CMakeLists.txt                  |   2 +-
 apps/rabema/CMakeLists.txt                         |   4 +-
 apps/rabema/rabema_build_gold_standard.cpp         |   2 +-
 apps/rabema/rabema_evaluate.cpp                    |   4 +-
 apps/razers/CMakeLists.txt                         |   2 +-
 apps/razers3/CMakeLists.txt                        |   2 +-
 apps/rep_sep/CMakeLists.txt                        |   2 +-
 apps/sak/CMakeLists.txt                            |   4 +-
 apps/sam2matrix/CMakeLists.txt                     |   2 +-
 apps/samcat/CMakeLists.txt                         |   2 +-
 apps/searchjoin/CMakeLists.txt                     |   2 +-
 apps/searchjoin/db.h                               |   8 +-
 apps/seqan_tcoffee/CMakeLists.txt                  |   2 +-
 apps/seqcons2/CMakeLists.txt                       |   2 +-
 apps/sgip/CMakeLists.txt                           |   2 +-
 apps/snp_store/CMakeLists.txt                      |   2 +-
 apps/splazers/CMakeLists.txt                       |   2 +-
 apps/stellar/CMakeLists.txt                        |   2 +-
 apps/stellar/stellar.cpp                           |   2 +-
 apps/tree_recon/CMakeLists.txt                     |   2 +-
 apps/yara/CMakeLists.txt                           |   2 +-
 debian/changelog                                   |  13 ++
 debian/rules                                       |  12 +-
 dox/CMakeLists.txt                                 |   2 +-
 .../align/local_alignment_waterman_eggert_impl.h   |  39 ++---
 include/seqan/arg_parse/arg_parse_argument.h       |  36 +----
 include/seqan/arg_parse/tool_doc.h                 |   7 -
 include/seqan/bam_io/bam_alignment_record_util.h   |   2 +-
 include/seqan/index/index_base.h                   |   2 +-
 include/seqan/index/index_fm_compressed_sa.h       |   6 +-
 include/seqan/index/index_fm_lf_table.h            |   2 +-
 .../seqan/index/index_fm_rank_dictionary_base.h    |   2 +-
 .../seqan/index/index_fm_rank_dictionary_levels.h  |   6 +-
 .../seqan/index/index_fm_rank_dictionary_naive.h   |   2 +-
 include/seqan/index/index_qgram.h                  |   2 +-
 include/seqan/modifier/modifier_padding.h          |  51 +-----
 include/seqan/platform.h                           |   4 +-
 include/seqan/seeds/seeds_global_chaining.h        | 162 ++++++++-----------
 include/seqan/stream/iter_stream.h                 | 178 +++++++++------------
 manual/source/Infrastructure/Use/Install.rst       |  42 ++---
 tests/align/test_alignment_algorithms_local.h      |  47 ------
 .../align/test_alignment_algorithms_local_banded.h |  32 ----
 tests/arg_parse/test_arg_parse.cpp                 |   1 -
 tests/arg_parse/test_arg_parse_argument.h          |  28 ----
 tests/modifier/test_modifier.cpp                   |   3 +-
 tests/modifier/test_modifier_string_padding.h      |  24 ---
 tests/seeds/test_seeds_global_chaining.cpp         |  26 ---
 util/cmake/SeqAnBuildSystem.cmake                  |  25 +--
 util/pkgconfig/seqan.pc.in                         |   4 +-
 util/skel/app_template/CMakeLists.txt              |   2 +-
 65 files changed, 276 insertions(+), 584 deletions(-)

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