[med-svn] [eagle] branch upstream updated (8c760af -> 2d8ac15)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch upstream
in repository eagle.

      from  8c760af   New upstream version 2.3.5
       new  2d8ac15   New upstream version 2.4

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 example/example.log          |  70 ++++++++++++-------------
 example/example_ref.log      |  15 +++---
 example/example_vcf.log      |  70 ++++++++++++-------------
 example/phased.vcf.gz        | Bin 200383 -> 200388 bytes
 example/target.phased.vcf.gz | Bin 21053 -> 21053 bytes
 src/Eagle.cpp                |  17 ++++++-
 src/Eagle.hpp                |   5 +-
 src/EagleMain.cpp            |  15 ++++--
 src/EaglePBWT.cpp            |  15 +++---
 src/EagleParams.cpp          |  11 +++-
 src/EagleParams.hpp          |   3 +-
 src/MapInterpolater.cpp      |  10 ++++
 src/SyncedVcfData.cpp        | 119 +++++++++++++++++++++++--------------------
 src/SyncedVcfData.hpp        |  19 +++----
 src/Version.hpp              |   4 +-
 15 files changed, 214 insertions(+), 159 deletions(-)

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