[med-svn] [mcl] branch upstream updated (5dddee9 -> e35e2ba)
Andreas Tille
tille at debian.org
Mon Jan 22 11:05:03 UTC 2018
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository mcl.
from 5dddee9 New upstream version 14-137
new cc86e81 New upstream version 14-137+ds
new e35e2ba New upstream version 14-137+ds
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.in | 704 ---------
doc/Makefile.in | 804 ----------
doc/clm.1 | 147 --
doc/clm.html | 226 ---
doc/clm.ps | 349 -----
doc/clmclose.1 | 144 --
doc/clmclose.html | 226 ---
doc/clmclose.ps | 366 -----
doc/clmdist.1 | 409 ------
doc/clmdist.html | 454 ------
doc/clmdist.ps | 828 -----------
doc/clmformat.1 | 627 --------
doc/clmformat.html | 674 ---------
doc/clmformat.ps | 1039 -------------
doc/clmimac.1 | 120 --
doc/clmimac.html | 214 ---
doc/clmimac.ps | 338 -----
doc/clminfo.1 | 187 ---
doc/clminfo.html | 262 ----
doc/clminfo.ps | 441 ------
doc/clminfo2.1 | 199 ---
doc/clminfo2.html | 264 ----
doc/clminfo2.ps | 426 ------
doc/clmmate.1 | 146 --
doc/clmmate.html | 218 ---
doc/clmmate.ps | 360 -----
doc/clmmeet.1 | 74 -
doc/clmmeet.html | 173 ---
doc/clmmeet.ps | 281 ----
doc/clmoptics.1 | 145 --
doc/clmoptics.html | 218 ---
doc/clmoptics.ps | 376 -----
doc/clmorder.1 | 87 --
doc/clmorder.html | 182 ---
doc/clmorder.ps | 310 ----
doc/clmprotocols.html | 435 ------
doc/clmprotocols.ps | 781 ----------
doc/clmprotocols2.html | 521 -------
doc/clmprotocols2.ps | 744 ----------
doc/clmresidue.1 | 96 --
doc/clmresidue.html | 196 ---
doc/clmresidue.ps | 309 ----
doc/clmvol.1 | 81 -
doc/clmvol.html | 178 ---
doc/clmvol.ps | 294 ----
doc/distindex.html | 199 ---
doc/index.html | 199 ---
doc/mcl.1 | 1569 --------------------
doc/mcl.html | 1522 -------------------
doc/mcl.ps | 2521 --------------------------------
doc/mclblastline.html | 227 ---
doc/mclblastline.ps | 401 -----
doc/mclcm.1 | 337 -----
doc/mclcm.html | 404 -----
doc/mclcm.ps | 655 ---------
doc/mclfamily.html | 245 ----
doc/mclfamily.ps | 306 ----
doc/mclfaq.html | 1487 -------------------
doc/mclfaq.ps | 2299 -----------------------------
doc/mclindex.ps | 300 ----
doc/mclpipeline.1 | 551 -------
doc/mclpipeline.html | 620 --------
doc/mclpipeline.ps | 891 -----------
doc/mcx.1 | 134 --
doc/mcx.html | 219 ---
doc/mcx.ps | 340 -----
doc/mcxalter.1 | 112 --
doc/mcxalter.html | 210 ---
doc/mcxalter.ps | 298 ----
doc/mcxarray.1 | 495 -------
doc/mcxarray.html | 437 ------
doc/mcxarray.ps | 685 ---------
doc/mcxassemble.1 | 560 -------
doc/mcxassemble.html | 522 -------
doc/mcxassemble.ps | 841 -----------
doc/mcxclcf.1 | 157 --
doc/mcxclcf.html | 215 ---
doc/mcxclcf.ps | 357 -----
doc/mcxconvert.1 | 114 --
doc/mcxconvert.html | 209 ---
doc/mcxconvert.ps | 345 -----
doc/mcxctty.1 | 195 ---
doc/mcxctty.html | 253 ----
doc/mcxctty.ps | 411 ------
doc/mcxdeblast.html | 303 ----
doc/mcxdeblast.ps | 452 ------
doc/mcxdiameter.1 | 172 ---
doc/mcxdiameter.html | 224 ---
doc/mcxdiameter.ps | 384 -----
doc/mcxdump.1 | 434 ------
doc/mcxdump.html | 452 ------
doc/mcxdump.ps | 730 ---------
doc/mcxerdos.1 | 173 ---
doc/mcxerdos.html | 260 ----
doc/mcxerdos.ps | 423 ------
doc/mcxi.1 | 349 -----
doc/mcxi.html | 460 ------
doc/mcxi.ps | 680 ---------
doc/mcxio.html | 780 ----------
doc/mcxio.ps | 1172 ---------------
doc/mcxload.1 | 583 --------
doc/mcxload.html | 589 --------
doc/mcxload.ps | 956 ------------
doc/mcxmap.1 | 223 ---
doc/mcxmap.html | 281 ----
doc/mcxmap.ps | 401 -----
doc/mcxquery.1 | 309 ----
doc/mcxquery.html | 372 -----
doc/mcxquery.ps | 588 --------
doc/mcxrand.1 | 236 ---
doc/mcxrand.html | 304 ----
doc/mcxrand.ps | 530 -------
doc/mcxsubs.1 | 605 --------
doc/mcxsubs.html | 682 ---------
doc/mcxsubs.ps | 947 ------------
doc/tingea.log.html | 213 ---
doc/tingea.log.ps | 448 ------
graphs/Makefile.in | 389 -----
img/Makefile.in | 382 -----
include/Makefile.in | 537 -------
scripts/Makefile.in | 405 -----
src/Makefile.in | 534 -------
src/alien/Makefile.in | 535 -------
src/alien/oxygen/Makefile.in | 535 -------
src/alien/oxygen/doc/Makefile.in | 481 ------
src/alien/oxygen/doc/mclblastline.1 | 136 --
src/alien/oxygen/doc/mclblastline.html | 227 ---
src/alien/oxygen/doc/mclblastline.ps | 401 -----
src/alien/oxygen/doc/mcxdeblast.1 | 193 ---
src/alien/oxygen/doc/mcxdeblast.html | 303 ----
src/alien/oxygen/doc/mcxdeblast.ps | 452 ------
src/alien/oxygen/src/Makefile.in | 395 -----
src/clew/Makefile.in | 443 ------
src/gryphon/Makefile.in | 439 ------
src/impala/Makefile.in | 453 ------
src/mcl/Makefile.in | 451 ------
src/shcl/Makefile.in | 609 --------
src/shmcl/Makefile.in | 486 ------
src/shmcx/Makefile.in | 481 ------
src/shmcxquery/Makefile.in | 437 ------
src/shmx/Makefile.in | 639 --------
testing/Makefile.in | 534 -------
testing/blast/Makefile.in | 338 -----
testing/setops/Makefile.in | 338 -----
testing/stream/Makefile.in | 338 -----
util/Makefile.in | 461 ------
146 files changed, 65562 deletions(-)
delete mode 100644 Makefile.in
delete mode 100644 doc/Makefile.in
delete mode 100644 doc/clm.1
delete mode 100644 doc/clm.html
delete mode 100644 doc/clm.ps
delete mode 100644 doc/clmclose.1
delete mode 100644 doc/clmclose.html
delete mode 100644 doc/clmclose.ps
delete mode 100644 doc/clmdist.1
delete mode 100644 doc/clmdist.html
delete mode 100644 doc/clmdist.ps
delete mode 100644 doc/clmformat.1
delete mode 100644 doc/clmformat.html
delete mode 100644 doc/clmformat.ps
delete mode 100644 doc/clmimac.1
delete mode 100644 doc/clmimac.html
delete mode 100644 doc/clmimac.ps
delete mode 100644 doc/clminfo.1
delete mode 100644 doc/clminfo.html
delete mode 100644 doc/clminfo.ps
delete mode 100644 doc/clminfo2.1
delete mode 100644 doc/clminfo2.html
delete mode 100644 doc/clminfo2.ps
delete mode 100644 doc/clmmate.1
delete mode 100644 doc/clmmate.html
delete mode 100644 doc/clmmate.ps
delete mode 100644 doc/clmmeet.1
delete mode 100644 doc/clmmeet.html
delete mode 100644 doc/clmmeet.ps
delete mode 100644 doc/clmoptics.1
delete mode 100644 doc/clmoptics.html
delete mode 100644 doc/clmoptics.ps
delete mode 100644 doc/clmorder.1
delete mode 100644 doc/clmorder.html
delete mode 100644 doc/clmorder.ps
delete mode 100644 doc/clmprotocols.html
delete mode 100644 doc/clmprotocols.ps
delete mode 100644 doc/clmprotocols2.html
delete mode 100644 doc/clmprotocols2.ps
delete mode 100644 doc/clmresidue.1
delete mode 100644 doc/clmresidue.html
delete mode 100644 doc/clmresidue.ps
delete mode 100644 doc/clmvol.1
delete mode 100644 doc/clmvol.html
delete mode 100644 doc/clmvol.ps
delete mode 100644 doc/distindex.html
delete mode 100644 doc/index.html
delete mode 100644 doc/mcl.1
delete mode 100644 doc/mcl.html
delete mode 100644 doc/mcl.ps
delete mode 100644 doc/mclblastline.html
delete mode 100644 doc/mclblastline.ps
delete mode 100644 doc/mclcm.1
delete mode 100644 doc/mclcm.html
delete mode 100644 doc/mclcm.ps
delete mode 100644 doc/mclfamily.html
delete mode 100644 doc/mclfamily.ps
delete mode 100644 doc/mclfaq.html
delete mode 100644 doc/mclfaq.ps
delete mode 100644 doc/mclindex.ps
delete mode 100644 doc/mclpipeline.1
delete mode 100644 doc/mclpipeline.html
delete mode 100644 doc/mclpipeline.ps
delete mode 100644 doc/mcx.1
delete mode 100644 doc/mcx.html
delete mode 100644 doc/mcx.ps
delete mode 100644 doc/mcxalter.1
delete mode 100644 doc/mcxalter.html
delete mode 100644 doc/mcxalter.ps
delete mode 100644 doc/mcxarray.1
delete mode 100644 doc/mcxarray.html
delete mode 100644 doc/mcxarray.ps
delete mode 100644 doc/mcxassemble.1
delete mode 100644 doc/mcxassemble.html
delete mode 100644 doc/mcxassemble.ps
delete mode 100644 doc/mcxclcf.1
delete mode 100644 doc/mcxclcf.html
delete mode 100644 doc/mcxclcf.ps
delete mode 100644 doc/mcxconvert.1
delete mode 100644 doc/mcxconvert.html
delete mode 100644 doc/mcxconvert.ps
delete mode 100644 doc/mcxctty.1
delete mode 100644 doc/mcxctty.html
delete mode 100644 doc/mcxctty.ps
delete mode 100644 doc/mcxdeblast.html
delete mode 100644 doc/mcxdeblast.ps
delete mode 100644 doc/mcxdiameter.1
delete mode 100644 doc/mcxdiameter.html
delete mode 100644 doc/mcxdiameter.ps
delete mode 100644 doc/mcxdump.1
delete mode 100644 doc/mcxdump.html
delete mode 100644 doc/mcxdump.ps
delete mode 100644 doc/mcxerdos.1
delete mode 100644 doc/mcxerdos.html
delete mode 100644 doc/mcxerdos.ps
delete mode 100644 doc/mcxi.1
delete mode 100644 doc/mcxi.html
delete mode 100644 doc/mcxi.ps
delete mode 100644 doc/mcxio.html
delete mode 100644 doc/mcxio.ps
delete mode 100644 doc/mcxload.1
delete mode 100644 doc/mcxload.html
delete mode 100644 doc/mcxload.ps
delete mode 100644 doc/mcxmap.1
delete mode 100644 doc/mcxmap.html
delete mode 100644 doc/mcxmap.ps
delete mode 100644 doc/mcxquery.1
delete mode 100644 doc/mcxquery.html
delete mode 100644 doc/mcxquery.ps
delete mode 100644 doc/mcxrand.1
delete mode 100644 doc/mcxrand.html
delete mode 100644 doc/mcxrand.ps
delete mode 100644 doc/mcxsubs.1
delete mode 100644 doc/mcxsubs.html
delete mode 100644 doc/mcxsubs.ps
delete mode 100644 doc/tingea.log.html
delete mode 100644 doc/tingea.log.ps
delete mode 100644 graphs/Makefile.in
delete mode 100644 img/Makefile.in
delete mode 100644 include/Makefile.in
delete mode 100644 scripts/Makefile.in
delete mode 100644 src/Makefile.in
delete mode 100644 src/alien/Makefile.in
delete mode 100644 src/alien/oxygen/Makefile.in
delete mode 100644 src/alien/oxygen/doc/Makefile.in
delete mode 100644 src/alien/oxygen/doc/mclblastline.1
delete mode 100644 src/alien/oxygen/doc/mclblastline.html
delete mode 100644 src/alien/oxygen/doc/mclblastline.ps
delete mode 100644 src/alien/oxygen/doc/mcxdeblast.1
delete mode 100644 src/alien/oxygen/doc/mcxdeblast.html
delete mode 100644 src/alien/oxygen/doc/mcxdeblast.ps
delete mode 100644 src/alien/oxygen/src/Makefile.in
delete mode 100644 src/clew/Makefile.in
delete mode 100644 src/gryphon/Makefile.in
delete mode 100644 src/impala/Makefile.in
delete mode 100644 src/mcl/Makefile.in
delete mode 100644 src/shcl/Makefile.in
delete mode 100644 src/shmcl/Makefile.in
delete mode 100644 src/shmcx/Makefile.in
delete mode 100644 src/shmcxquery/Makefile.in
delete mode 100644 src/shmx/Makefile.in
delete mode 100644 testing/Makefile.in
delete mode 100644 testing/blast/Makefile.in
delete mode 100644 testing/setops/Makefile.in
delete mode 100644 testing/stream/Makefile.in
delete mode 100644 util/Makefile.in
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