[med-svn] [mcl] 04/05: Fix further spelling issues

[Andreas Tille]

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tille pushed a commit to branch master
in repository mcl.

commit aaf9ea13ad72e4d328b2f46a13ba8e7ace3272ea
Author: Andreas Tille <tille at debian.org>
Date:   Mon Jan 22 13:00:46 2018 +0100

    Fix further spelling issues
---
 debian/changelog              |  1 +
 debian/patches/spelling.patch | 64 +++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 65 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index d73c3de..8f35a97 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -6,6 +6,7 @@ mcl (1:14-137+ds-1) UNRELEASED; urgency=medium
     prevent building the package twice in a row
   * Standards-Version: 4.1.3
   * debhelper 11
+  * Fix further spelling issues
 
  -- Andreas Tille <tille at debian.org>  Mon, 22 Jan 2018 11:30:15 +0100
 
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
index 498696b..7842969 100644
--- a/debian/patches/spelling.patch
+++ b/debian/patches/spelling.patch
@@ -117,6 +117,15 @@ Description: Fix spelling
     loading networks is by using \mysib{mcxload}. The option
     \genopt{-write-expanded} can be useful for exploring more complicated input
     transformations that incorporate an expansion step, but is not really
+@@ -974,7 +974,7 @@ option.}
+    although this almost never happens in practice, as it requires some
+    particular type of symmetry to be present in the input graph (not just any
+    symmetry will do).  Mathematically speaking, this is a conjecture and not a
+-   theorem, but the present author wil eat his shoe if it fails to be true (for
++   theorem, but the present author will eat his shoe if it fails to be true (for
+    marzipan values of shoe).  It is easy though to construct an input graph for
+    which certain mcl settings result in overlap - for example a line graph on
+    an odd number of nodes.  The default is to excise overlapping parts and
 @@ -1421,7 +1421,7 @@ with value 0.8.}
     Euclidean data. So mcl in its canonical form is certainly not fit for
     boundary detection or image segmentation. I experimented with a modified
@@ -410,3 +419,58 @@ Description: Fix spelling
   *
   * support growing files. and look at other items in the grep source code.
  */
+--- a/scripts/mlm-quilt
++++ b/scripts/mlm-quilt
+@@ -12,7 +12,7 @@
+ #
+ #  !!!
+ #     try tree search with depth 2 when testing descend.
+-#  !encapsulate PN_keep etc initalization and updating.
++#  !encapsulate PN_keep etc initialization and updating.
+ #  write clusters with scores, consensus.
+ 
+ # [bc-9-1-02|fam41/rip26] mlmimpromptu --ignore-size=3 --fnannot=../data/paf41.ipro
+--- a/src/mcl/procinit.c
++++ b/src/mcl/procinit.c
+@@ -209,7 +209,7 @@ mcxOptAnchor mclProcOptions[] =
+    ,  MCX_OPT_HASARG | MCX_OPT_HIDDEN
+    ,  PROC_OPT_RPRUNE
+    ,  "<int>"
+-   ,  "use inital pruning cutoff <MAX>/<int>"
++   ,  "use initial pruning cutoff <MAX>/<int>"
+    }
+ ,  {  "-skid"
+    ,  MCX_OPT_HASARG | MCX_OPT_HIDDEN
+--- a/src/shmx/mcxdiameter.c
++++ b/src/shmx/mcxdiameter.c
+@@ -916,7 +916,7 @@ void compute_scores_up_vc              /
+ )
+    {  dim j
+    ;  for (j=0;j<N_COLS(up);j++)
+-      up->cols[j].val = 1.0            /* accumulator; initalised */
++      up->cols[j].val = 1.0            /* accumulator; initialised */
+                                        /* question: initialise everywhere? */
+ 
+    ;  for (j=0;j<n_order;j++)
+--- a/doc/clmorder.azm
++++ b/doc/clmorder.azm
+@@ -66,7 +66,7 @@
+ {\defopt{-o}{<fname>}}
+ }
+ \car{
+-   As decribed above.
++   As described above.
+    }
+ 
+ \'end{itemize}
+--- a/doc/mcxload.azm
++++ b/doc/mcxload.azm
+@@ -467,7 +467,7 @@
+    {\defopt{-pack-rnum}{<num>}{set row range}}
+ }
+ \car{
+-   The \genopt{-packed} option allows to read machine-readable data
++   The \genopt{-packed} option allows one to read machine-readable data
+    directly. The data has to correspond to the data types for indexes
+    and values with with MCL was compiled. The use of \genopt{-pack-cnum}
+    and \genopt{-pack-rnum} is required to set the limits of

-- 
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