[med-svn] [Git][med-team/aegean][master] 11 commits: update email address and changelog
Sascha Steinbiss
gitlab at salsa.debian.org
Wed Jul 4 17:32:59 BST 2018
Sascha Steinbiss pushed to branch master at Debian Med / aegean
Commits:
571c68cb by Sascha Steinbiss at 2018-07-04T18:22:30+02:00
update email address and changelog
- - - - -
f16eafe1 by Sascha Steinbiss at 2018-07-04T18:22:55+02:00
use debhelper 11
- - - - -
b432e5b1 by Sascha Steinbiss at 2018-07-04T18:23:09+02:00
use secure d/copyright format link
- - - - -
c609348e by Sascha Steinbiss at 2018-07-04T18:23:21+02:00
bump Standards-Version
- - - - -
77766c7e by Sascha Steinbiss at 2018-07-04T18:24:42+02:00
update Vcs-* for Salsa
- - - - -
f31b2b9c by Sascha Steinbiss at 2018-07-04T18:26:18+02:00
extra -> optional
- - - - -
28983008 by Sascha Steinbiss at 2018-07-04T18:26:43+02:00
remove unnecessary Testsuite field
- - - - -
b6cba234 by Sascha Steinbiss at 2018-07-04T18:27:58+02:00
drop unused patches
- - - - -
8c355ad9 by Sascha Steinbiss at 2018-07-04T18:28:41+02:00
drop -dbg package
- - - - -
625c92c9 by Sascha Steinbiss at 2018-07-04T18:29:38+02:00
fix naming of lintian override
- - - - -
2b2906a3 by Sascha Steinbiss at 2018-07-04T18:30:49+02:00
remove mention of -dbg package
- - - - -
10 changed files:
- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- − debian/patches/add_version
- − debian/patches/remove_jquery
- − debian/patches/remove_mootools
- − debian/patches/sort_source_files
- debian/rules
- debian/source.lintian-overrides
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,25 @@
+aegean (0.15.2+dfsg-2) unstable; urgency=medium
+
+ [ Andreas Tille ]
+ * Fix and adjust upstream metadata.
+
+ [ Steffen Moeller ]
+ * Fix EDAM annotations.
+
+ [ Sascha Steinbiss ]
+ * Update Uploader email address.
+ * Use debhelper 11.
+ * Use secure d/copyright format link.
+ * Bump Standards-Version.
+ * Update Vcs-* fields with Salsa addresses.
+ * Replace priority extra with optional.
+ * Remove unnecessary Testsuite field.
+ * Drop unused patch files.
+ * Drop -dbg package.
+ * Fix naming of lintian override.
+
+ -- Sascha Steinbiss <satta at debian.org> Wed, 04 Jul 2018 18:20:29 +0200
+
aegean (0.15.2+dfsg-1) unstable; urgency=medium
* New upstream version.
=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -1,17 +1,16 @@
Source: aegean
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
+Uploaders: Sascha Steinbiss <satta at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11),
libcairo2-dev,
libgenometools0-dev,
python,
git
-Standards-Version: 3.9.7
-Testsuite: autopkgtest
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/aegean.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/aegean.git
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/aegean
+Vcs-Git: https://salsa.debian.org/med-team/aegean.git
Homepage: http://standage.github.io/AEGeAn
Package: aegean
@@ -27,15 +26,3 @@ Description: integrated genome analysis toolkit
Annotations. The toolkit includes a variety of analysis programs, e.g. for
comparing distinct sets of gene structure annotations (ParsEval), computation
of gene loci (LocusPocus) and more.
-
-Package: aegean-dbg
-Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32
-Section: debug
-Priority: extra
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- aegean (= ${binary:Version})
-Description: integrated genome analysis toolkit, with debug symbols
- This package contains debug information stripped from AEGeAn.
- You may decide to install it to help identifying issues, typically
- to help communication with upstream developers.
=====================================
debian/copyright
=====================================
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: aegean
Source: http://aegean.readthedocs.org/en/v0.10.2/license.html
Files-Excluded: data/share/vendor/jquery.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/jquery.js data/share/vendor/jquery.dataTables.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/jquery.dataTables.js data/share/vendor/mootools-core-1.3.2-full-nocompat-yc.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/mootools-core-1.3.2-full-nocompat-yc.js data/share/vendor/mootools-more-1.3.2.1.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/mootools-more-1.3.2.1.js
=====================================
debian/patches/add_version deleted
=====================================
--- a/debian/patches/add_version
+++ /dev/null
@@ -1,60 +0,0 @@
-Description: Add_version
---- a/Makefile
-+++ b/Makefile
-@@ -99,47 +99,47 @@
- $(AGN_OBJS): obj/%.o : src/core/%.c inc/core/%.h inc/core/AgnVersion.h
- @- mkdir -p obj
- @ echo "[compile $*]"
-- @ $(CC) $(CFLAGS) $(INCS) -c -o $@ $<
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -c -o $@ $<
-
- $(PE_EXE): src/ParsEval/parseval.c src/ParsEval/pe_options.c src/ParsEval/pe_utils.c src/ParsEval/pe_options.h src/ParsEval/pe_utils.h $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile ParsEval]"
-- @ $(CC) $(CFLAGS) $(INCS) -I src/ParsEval -o $@ $(AGN_OBJS) src/ParsEval/parseval.c src/ParsEval/pe_options.c src/ParsEval/pe_utils.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -I src/ParsEval -o $@ $(AGN_OBJS) src/ParsEval/parseval.c src/ParsEval/pe_options.c src/ParsEval/pe_utils.c $(LDFLAGS)
-
- $(CN_EXE): src/canon-gff3.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile CanonGFF3]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/canon-gff3.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/canon-gff3.c $(LDFLAGS)
-
- $(LP_EXE): src/locuspocus.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile LocusPocus]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/locuspocus.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/locuspocus.c $(LDFLAGS)
-
- $(GV_EXE): src/gaeval.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile GAEVAL]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/gaeval.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/gaeval.c $(LDFLAGS)
-
- $(XT_EXE): src/xtractore.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile Xtractore]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/xtractore.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/xtractore.c $(LDFLAGS)
-
- $(RP_EXE): src/pmrna.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile $@]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/pmrna.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/pmrna.c $(LDFLAGS)
-
- $(TD_EXE): src/tidygff3.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile $@]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/tidygff3.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) src/tidygff3.c $(LDFLAGS)
-
- $(UT_EXE): test/unittests.c $(AGN_OBJS)
- @ mkdir -p bin
- @ echo "[compile unit tests]"
-- @ $(CC) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) test/unittests.c $(LDFLAGS)
-+ @ $(CC) $(CPPFLAGS) $(CFLAGS) $(INCS) -o $@ $(AGN_OBJS) test/unittests.c $(LDFLAGS)
-
- libaegean.a: $(AGN_OBJS)
- @ echo "[create libaegean]"
=====================================
debian/patches/remove_jquery deleted
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/patches/remove_mootools deleted
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/patches/sort_source_files deleted
=====================================
--- a/debian/patches/sort_source_files
+++ /dev/null
@@ -1,12 +0,0 @@
-Description: Sort_source_files
---- a/Makefile
-+++ b/Makefile
-@@ -21,7 +21,7 @@
- #----- Source, header, and object files -----#
-
- # AEGeAn core class and module files
--AGN_SRCS=$(wildcard src/core/Agn*.c)
-+AGN_SRCS=$(sort $(wildcard src/core/Agn*.c))
- AGN_OBJS=$(patsubst src/core/%.c,obj/%.o,$(AGN_SRCS))
- AGN_HDRS=$(patsubst src/core%.c,inc/core/%.h,$(AGN_SRCS))
-
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -28,9 +28,6 @@ override_dh_auto_test:
override_dh_auto_install:
dh_auto_install -- 64bit=$(64BIT) prefix=$(DESTDIR)
-override_dh_strip:
- dh_strip --dbg-package=aegean-dbg
-
override_dh_installdocs:
cp $(CURDIR)/README.md $(CURDIR)/README
dh_installdocs
=====================================
debian/source.lintian-overrides
=====================================
--- a/debian/source.lintian-overrides
+++ b/debian/source.lintian-overrides
@@ -1,2 +1,2 @@
# Upstream does not provide signed tarballs.
-aegean source: debian-watch-may-check-gpg-signature
+aegean source: debian-watch-does-not-check-gpg-signature
View it on GitLab: https://salsa.debian.org/med-team/aegean/compare/b59c9b6d33e35f8dafcd35112c597968ef9cb08f...2b2906a3739e17ddcaada6c5478a1797ee1bd2c2
--
View it on GitLab: https://salsa.debian.org/med-team/aegean/compare/b59c9b6d33e35f8dafcd35112c597968ef9cb08f...2b2906a3739e17ddcaada6c5478a1797ee1bd2c2
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