[med-svn] [Git][med-team/python-gffutils][master] Added packages for Python version 2

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / python-gffutils


Commits:
d75421ee by Steffen Moeller at 2018-07-08T01:49:22+02:00
Added packages for Python version 2

Needed for bcbio.

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -8,6 +8,8 @@ python-gffutils (0.9-1) UNRELEASED; urgency=medium
 
   * d/u/metadata: Added RRIDs
 
+  * Added Python 2 packages, separated executable
+
  -- Steffen Moeller <moeller at debian.org>  Sun, 15 Apr 2018 14:03:00 +0200
 
 python-gffutils (0.8.7.1-1) REMOVED; urgency=medium


=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,14 @@ Priority: optional
 Build-Depends: debhelper (>= 10),
                dh-python,
                bedtools,
-               python3,
+               python-all,
+               python-setuptools,
+               python-simplejson,
+               python-six,
+               python-pyfaidx,
+               python-nose,
+               python-biopython,
+               python-pybedtools,
                python3-all,
                python3-setuptools,
                python3-simplejson,
@@ -17,11 +24,24 @@ Build-Depends: debhelper (>= 10),
                python3-nose,
                python3-biopython,
                python3-pybedtools
-Standards-Version: 4.1.4
+Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-gffutils.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/python-gffutils.git
 Homepage: https://daler.github.io/gffutils
 
+Package: python-gffutils
+Architecture: all
+Depends: ${python2:Depends},
+         ${misc:Depends}
+Description: Work with GFF and GTF files in a flexible database framework
+ A Python package for working with and manipulating the GFF and GTF format
+ files typically used for genomic annotations.  Files are loaded into a
+ sqlite3 database, allowing much more complex manipulation of hierarchical
+ features (e.g., genes, transcripts, and exons) than is possible with
+ plain-text methods alone.
+ .
+ This is the Python 2 version.
+
 Package: python3-gffutils
 Architecture: all
 Depends: ${python3:Depends},
@@ -32,3 +52,29 @@ Description: Work with GFF and GTF files in a flexible database framework
  sqlite3 database, allowing much more complex manipulation of hierarchical
  features (e.g., genes, transcripts, and exons) than is possible with
  plain-text methods alone.
+ .
+ This is the Python 3 version.
+
+Package: python-gffutils-bin
+Architecture: all
+Depends: ${misc:Depends}, python-gffutils
+Description: Work with GFF and GTF files in a flexible database framework
+ A Python package for working with and manipulating the GFF and GTF format
+ files typically used for genomic annotations.  Files are loaded into a
+ sqlite3 database, allowing much more complex manipulation of hierarchical
+ features (e.g., genes, transcripts, and exons) than is possible with
+ plain-text methods alone.
+ .
+ This package offers Python 2 executables.
+
+Package: python3-gffutils-bin
+Architecture: all
+Depends: ${misc:Depends}, python3-gffutils
+Description: Work with GFF and GTF files in a flexible database framework
+ A Python package for working with and manipulating the GFF and GTF format
+ files typically used for genomic annotations.  Files are loaded into a
+ sqlite3 database, allowing much more complex manipulation of hierarchical
+ features (e.g., genes, transcripts, and exons) than is possible with
+ plain-text methods alone.
+ .
+ This package offers Python 3 executables.


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -6,4 +6,13 @@ export PYBUILD_NAME=gffutils
 export PYBUILD_DISABLE=test  # https://github.com/daler/gffutils/issues/91
 
 %:
-	dh $@ --with python3 --buildsystem=pybuild
+	dh $@ --with python2,python3 --buildsystem=pybuild
+
+override_dh_auto_install:
+	dh_auto_install
+	mkdir -p debian/python-gffutils-bin/usr/bin
+	mkdir -p debian/python3-gffutils-bin/usr/bin
+	mv debian/python-gffutils/usr/bin/*  debian/python-gffutils-bin/usr/bin/
+	mv debian/python3-gffutils/usr/bin/* debian/python3-gffutils-bin/usr/bin/
+	rm -rf debian/python-gffutils/usr/bin debian/python3-gffutils/usr/bin
+



View it on GitLab: https://salsa.debian.org/med-team/python-gffutils/commit/d75421eecef27a0079d2a7bea3b57748f18d8cf2

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View it on GitLab: https://salsa.debian.org/med-team/python-gffutils/commit/d75421eecef27a0079d2a7bea3b57748f18d8cf2
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