[med-svn] [Git][med-team/spaced][master] Follow hint of Fabian Klötzl <kloetzl at evolbio.mpg.de>

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / spaced


Commits:
a06a4376 by Andreas Tille at 2018-07-09T14:29:50+02:00
Follow hint of Fabian Klötzl <kloetzl at evolbio.mpg.de>

- - - - -


1 changed file:

- debian/patches/0004-signed.patch


Changes:

=====================================
debian/patches/0004-signed.patch
=====================================
--- a/debian/patches/0004-signed.patch
+++ b/debian/patches/0004-signed.patch
@@ -80,3 +80,23 @@ Description: Fix some types
  							uint pos=matchPos[o];
  							c= seqData[j+pos];
  							w|=(unsigned long long) alphabet[c] << bits;
+--- a/src/patternset.cpp
++++ b/src/patternset.cpp
+@@ -184,17 +184,6 @@ void patternset::ReInit(){
+  * Checks, if bitmode is possible.
+  */
+ void patternset::CheckParams(){
+-	if(size < 0){
+-		size = std::abs(size);
+-		if(size <= 0){
+-			size = 10;
+-			update = true;
+-		}
+-	}
+-	if(max_dontcare < 0 || min_dontcare < 0){
+-		max_dontcare = std::abs(max_dontcare);
+-		min_dontcare = std::abs(min_dontcare);
+-	}
+ 	if(max_dontcare < min_dontcare){
+ 		std::swap(max_dontcare,min_dontcare);
+ 	}



View it on GitLab: https://salsa.debian.org/med-team/spaced/commit/a06a4376dedf082728363932937136ced76a1f87

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View it on GitLab: https://salsa.debian.org/med-team/spaced/commit/a06a4376dedf082728363932937136ced76a1f87
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