[med-svn] [Git][med-team/repeatmasker-recon][master] 9 commits: debhelper 11
Andreas Tille
gitlab at salsa.debian.org
Tue Jul 10 14:14:25 BST 2018
Andreas Tille pushed to branch master at Debian Med / repeatmasker-recon
Commits:
c2b34020 by Andreas Tille at 2018-07-10T11:27:19+02:00
debhelper 11
- - - - -
faf66972 by Andreas Tille at 2018-07-10T11:27:22+02:00
Point Vcs fields to salsa.debian.org
- - - - -
4145546f by Andreas Tille at 2018-07-10T11:27:23+02:00
Standards-Version: 4.1.4
- - - - -
a3edcc7c by Andreas Tille at 2018-07-10T11:43:03+02:00
Fix spelling in description, Standards-Version: 4.1.5
- - - - -
adeb22c8 by Andreas Tille at 2018-07-10T11:45:06+02:00
Do not parse d/changelog
- - - - -
d5896cfd by Andreas Tille at 2018-07-10T11:45:41+02:00
Spelling
- - - - -
898cd967 by Andreas Tille at 2018-07-10T11:46:27+02:00
hardening=+all
- - - - -
bc2a6fa4 by Andreas Tille at 2018-07-10T11:49:30+02:00
Hack to propagate hardening options
- - - - -
b5f60da9 by Andreas Tille at 2018-07-10T12:54:20+02:00
Spelling, Upload to unstable
- - - - -
8 changed files:
- debian/changelog
- debian/compat
- debian/control
- debian/mans/repeatmasker-recon.1
- debian/patches/0001-udpate-paths.patch
- + debian/patches/0003-hardening.patch
- debian/patches/series
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,14 @@
+repeatmasker-recon (1.08-4) unstable; urgency=medium
+
+ * debhelper 11
+ * Point Vcs fields to salsa.debian.org
+ * Standards-Version: 4.1.5
+ * Fix spelling in description
+ * Do not parse d/changelog
+ * hardening=+all
+
+ -- Andreas Tille <tille at debian.org> Tue, 10 Jul 2018 11:49:40 +0200
+
repeatmasker-recon (1.08-3) unstable; urgency=medium
* Add myself to Uploaders
=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -4,11 +4,11 @@ Uploaders: Olivier Sallou <osallou at debian.org>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
help2man
-Standards-Version: 3.9.7
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/repeatmasker-recon.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/repeatmasker-recon.git
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon
+Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git
Homepage: http://www.repeatmasker.org/
Package: repeatmasker-recon
@@ -17,7 +17,7 @@ Depends: ${shlibs:Depends},
${misc:Depends},
${perl:Depends}
Description: finds repeat families from biological sequences
- The RECON package implements a de novo algorithm for the indentification
+ The RECON package implements a de novo algorithm for the identification
of repeat families from biological sequences.
.
The program implements an approach for the de novo identification and
=====================================
debian/mans/repeatmasker-recon.1
=====================================
--- a/debian/mans/repeatmasker-recon.1
+++ b/debian/mans/repeatmasker-recon.1
@@ -6,7 +6,7 @@ repeatmasker-recon \- finds repeat families from biological sequences
.B repeatmasker-recon
seq_name_list_file MSP_file integer
.SH DESCRIPTION
-The RECON package implements a de novo algorithm for the indentification
+The RECON package implements a de novo algorithm for the identification
of repeat families from biological sequences.
.P
The program implements an approach for the de novo identification and
=====================================
debian/patches/0001-udpate-paths.patch
=====================================
--- a/debian/patches/0001-udpate-paths.patch
+++ b/debian/patches/0001-udpate-paths.patch
@@ -1,6 +1,6 @@
From: Olivier Sallou <osallou at debian.org>
Date: Fri, 21 Aug 2015 21:02:20 +0000
-Subject: udpate paths
+Subject: update paths
---
scripts/recon.pl | 2 +-
=====================================
debian/patches/0003-hardening.patch
=====================================
--- /dev/null
+++ b/debian/patches/0003-hardening.patch
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 10 Jul 2018 11:27:19 +0200
+Description: Hack to propagate hardening options
+
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -48,7 +48,7 @@ COMPRESS = gzip # GNU comp
+ ## should not need to modify below this line
+ #######
+ SHELL = /bin/sh
+-LIBS = -lsquid -lm
++LIBS = -lsquid -lm $(LDFLAGS)
+ #LIBS = -ldbmalloc -lsquid -lm
+
+ READMES = README
=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
0001-udpate-paths.patch
0002-fix_binary_name.patch
+0003-hardening.patch
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -7,8 +7,7 @@
DPKG_EXPORT_BUILDFLAGS = 1
include /usr/share/dpkg/default.mk
-# see FEATURE AREAS in dpkg-buildflags(1)
-#export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
# see ENVIRONMENT in dpkg-buildflags(1)
# package maintainers to append CFLAGS
@@ -16,10 +15,6 @@ include /usr/share/dpkg/default.mk
# package maintainers to append LDFLAGS
#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed
-DEB_UPSTREAM_VERSION ?= $(shell dpkg-parsechangelog \
- | sed -rne 's/^Version: ([0-9.]+)[-+].*$$/\1/p')
-
-
# main packaging script based on dh7 syntax
%:
dh $@
View it on GitLab: https://salsa.debian.org/med-team/repeatmasker-recon/compare/c3ad428b1ec791de0d0f9319ce665444357daa31...b5f60da9bf85e28272d4b7ca3da33e8617852838
--
View it on GitLab: https://salsa.debian.org/med-team/repeatmasker-recon/compare/c3ad428b1ec791de0d0f9319ce665444357daa31...b5f60da9bf85e28272d4b7ca3da33e8617852838
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