[med-svn] [Git][med-team/gff2ps][master] Add autopkgtest
Liubov Chuprikova
gitlab at salsa.debian.org
Wed Jul 11 11:37:51 BST 2018
Liubov Chuprikova pushed to branch master at Debian Med / gff2ps
Commits:
bdbe0bde by Liubov Chuprikova at 2018-07-11T13:36:59+03:00
Add autopkgtest
- - - - -
15 changed files:
- + debian/README.test
- debian/changelog
- debian/copyright
- + debian/docs
- + debian/tests/control
- + debian/tests/run-unit-test
- + debian/tests/test-data/Hsap_BTK_annotation.gff
- + debian/tests/test-data/Hsap_BTK_geneid.gff
- + debian/tests/test-data/Hsap_BTK_genscan.gff
- + debian/tests/test-data/Hsap_BTK_repeatmasker.gff
- + debian/tests/test-data/Hsap_BTK_sgp3X.gff
- + debian/tests/test-data/Hsap_BTK_sgpFO.gff
- + debian/tests/test-data/Hsap_BTK_tblastx3X.gff
- + debian/tests/test-data/Hsap_BTK_tblastxFO.gff
- + debian/tests/test-data/brown.a3.rc
Changes:
=====================================
debian/README.test
=====================================
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+________________________________________
+
+This package can be tested by execution
+
+ sh run-unit-test
+
+in order to confirm its integrity.
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,6 +2,7 @@ gff2ps (0.98l-2) UNRELEASED; urgency=medium
* Team upload.
* Add patch to fix exit status
+ * Add autopkgtest
-- Liubov Chuprikova <chuprikovalv at gmail.com> Wed, 11 Jul 2018 13:17:27 +0300
=====================================
debian/copyright
=====================================
--- a/debian/copyright
+++ b/debian/copyright
@@ -13,6 +13,13 @@ Copyright: 2005-2008 Nelson A. de Oliveira <naoliv at gmail.com>
2012 Andreas Tille <tille at debian.org>
License: GPL-2+
+Files: debian/tests/test-data/*
+Copyright: 1999-2003 Josep Francesc ABRIL FERRANDO
+ Roderic GUIGO SERRA
+License: GPL-2+
+Comment: Test data files were taken from one of gff2ps tutorials:
+ http://genome.crg.es/software/gfftools/gff2ps_docs/comp_sources/index.html
+
License: GPL-2+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
=====================================
debian/docs
=====================================
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+debian/tests/test-data
+debian/tests/run-unit-test
+debian/README.test
=====================================
debian/tests/control
=====================================
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
=====================================
debian/tests/run-unit-test
=====================================
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,22 @@
+#!/bin/sh -e
+
+pkg="gff2ps"
+
+if [ "$AUTOPKGTEST_TMP" = "" ]; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cd $AUTOPKGTEST_TMP
+cp -a /usr/share/doc/${pkg}/test-data/* .
+gunzip *.gz
+
+echo "Testing gff2ps...\n"
+gff2ps -C brown.a3.rc -- Hsap_BTK_annotation.gff \
+ Hsap_BTK_sgp3X.gff Hsap_BTK_tblastx3X.gff \
+ Hsap_BTK_sgpFO.gff Hsap_BTK_tblastxFO.gff \
+ Hsap_BTK_geneid.gff Hsap_BTK_genscan.gff \
+ Hsap_BTK_repeatmasker.gff \
+ > Hsap_BTK_ALL_a3.ps
+
+echo "\nPASS"
=====================================
debian/tests/test-data/Hsap_BTK_annotation.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_annotation.gff
@@ -0,0 +1,33 @@
+Hsap_BTK annotation Single 14065 14214 . - 0 LOC82570
+Hsap_BTK annotation First 75039 75170 . - 0 TIMM8A
+Hsap_BTK annotation Terminal 73005 73166 . - 0 TIMM8A
+Hsap_BTK annotation First 101650 101790 . - 0 BTK
+Hsap_BTK annotation Internal 101042 101140 . - 0 BTK
+Hsap_BTK annotation Internal 98139 98207 . - 0 BTK
+Hsap_BTK annotation Internal 96504 96585 . - 0 BTK
+Hsap_BTK annotation Internal 89067 89195 . - 1 BTK
+Hsap_BTK annotation Internal 88679 88746 . - 1 BTK
+Hsap_BTK annotation Internal 87074 87261 . - 0 BTK
+Hsap_BTK annotation Internal 86594 86656 . - 2 BTK
+Hsap_BTK annotation Internal 85799 85853 . - 2 BTK
+Hsap_BTK annotation Internal 85123 85202 . - 0 BTK
+Hsap_BTK annotation Internal 84816 84943 . - 2 BTK
+Hsap_BTK annotation Internal 84015 84089 . - 1 BTK
+Hsap_BTK annotation Internal 83290 83461 . - 1 BTK
+Hsap_BTK annotation Internal 82558 82774 . - 2 BTK
+Hsap_BTK annotation Internal 81136 81200 . - 0 BTK
+Hsap_BTK annotation Internal 80376 80494 . - 2 BTK
+Hsap_BTK annotation Internal 79700 79857 . - 1 BTK
+Hsap_BTK annotation Terminal 76391 76462 . - 0 BTK
+Hsap_BTK annotation First 117550 117552 . + 0 RPL44
+Hsap_BTK annotation Internal 117965 118070 . + 0 RPL44
+Hsap_BTK annotation Internal 118262 118328 . + 1 RPL44
+Hsap_BTK annotation Terminal 121841 121868 . + 2 RPL44
+Hsap_BTK annotation First 134216 134409 . - 0 GLA
+Hsap_BTK annotation Internal 130317 130491 . - 2 GLA
+Hsap_BTK annotation Internal 128138 128315 . - 0 GLA
+Hsap_BTK annotation Internal 127172 127263 . - 1 GLA
+Hsap_BTK annotation Internal 125291 125452 . - 0 GLA
+Hsap_BTK annotation Internal 124876 125073 . - 0 GLA
+Hsap_BTK annotation Terminal 124315 124605 . - 0 GLA
+Hsap_BTK annotation Single 138495 139844 . + 0 HNRPH2
=====================================
debian/tests/test-data/Hsap_BTK_geneid.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_geneid.gff
@@ -0,0 +1,40 @@
+Hsap_BTK geneid_v1.0 Internal 1728 1787 0.09 - 0 gene_1 # AA 212:231
+Hsap_BTK geneid_v1.0 Internal 2506 2618 2.93 - 2 gene_1 # AA 174:211
+Hsap_BTK geneid_v1.0 Internal 4112 4225 0.50 - 2 gene_1 # AA 136:174
+Hsap_BTK geneid_v1.0 Internal 8833 8959 -0.24 - 0 gene_1 # AA 94:136
+Hsap_BTK geneid_v1.0 Internal 9956 10089 1.98 - 2 gene_1 # AA 49: 93
+Hsap_BTK geneid_v1.0 Internal 13081 13159 0.13 - 0 gene_1 # AA 23: 49
+Hsap_BTK geneid_v1.0 First 13984 14049 -0.61 - 0 gene_1 # AA 1: 22
+Hsap_BTK geneid_v1.0 Terminal 17520 17785 4.22 - 2 gene_2 # AA 86:174
+Hsap_BTK geneid_v1.0 First 19296 19551 14.31 - 0 gene_2 # AA 1: 86
+Hsap_BTK geneid_v1.0 Terminal 76391 76462 1.12 - 0 gene_3 # AA 636:659
+Hsap_BTK geneid_v1.0 Internal 79700 79857 1.52 - 2 gene_3 # AA 583:635
+Hsap_BTK geneid_v1.0 Internal 80376 80494 0.93 - 1 gene_3 # AA 543:583
+Hsap_BTK geneid_v1.0 Internal 81136 81200 0.46 - 0 gene_3 # AA 522:543
+Hsap_BTK geneid_v1.0 Internal 82558 82774 5.08 - 1 gene_3 # AA 449:521
+Hsap_BTK geneid_v1.0 Internal 83290 83533 4.90 - 2 gene_3 # AA 368:449
+Hsap_BTK geneid_v1.0 Internal 84816 84943 0.10 - 1 gene_3 # AA 325:368
+Hsap_BTK geneid_v1.0 Internal 85123 85202 1.44 - 0 gene_3 # AA 299:325
+Hsap_BTK geneid_v1.0 Internal 85799 85853 0.18 - 1 gene_3 # AA 280:298
+Hsap_BTK geneid_v1.0 Internal 86594 86656 1.66 - 1 gene_3 # AA 259:280
+Hsap_BTK geneid_v1.0 Internal 87074 87261 4.48 - 0 gene_3 # AA 197:259
+Hsap_BTK geneid_v1.0 Internal 88679 88746 -0.20 - 2 gene_3 # AA 174:196
+Hsap_BTK geneid_v1.0 Internal 89067 89195 2.37 - 2 gene_3 # AA 131:174
+Hsap_BTK geneid_v1.0 Internal 96504 96585 -1.14 - 0 gene_3 # AA 104:131
+Hsap_BTK geneid_v1.0 Internal 98139 98207 2.20 - 0 gene_3 # AA 81:103
+Hsap_BTK geneid_v1.0 Internal 101042 101140 1.03 - 0 gene_3 # AA 48: 80
+Hsap_BTK geneid_v1.0 First 101650 101790 2.04 - 0 gene_3 # AA 1: 47
+Hsap_BTK geneid_v1.0 First 117154 117294 -1.72 + 0 gene_4 # AA 1: 47
+Hsap_BTK geneid_v1.0 Internal 117965 118070 4.71 + 0 gene_4 # AA 48: 83
+Hsap_BTK geneid_v1.0 Internal 118261 118328 1.96 + 2 gene_4 # AA 83:105
+Hsap_BTK geneid_v1.0 Terminal 122234 122254 -1.95 + 0 gene_4 # AA 106:112
+Hsap_BTK geneid_v1.0 Terminal 124315 124605 1.49 - 0 gene_5 # AA 321:417
+Hsap_BTK geneid_v1.0 Internal 124876 125073 4.19 - 0 gene_5 # AA 255:320
+Hsap_BTK geneid_v1.0 Internal 125291 125452 1.81 - 0 gene_5 # AA 201:254
+Hsap_BTK geneid_v1.0 Internal 128085 128315 6.42 - 0 gene_5 # AA 124:200
+Hsap_BTK geneid_v1.0 Internal 130317 130491 3.37 - 1 gene_5 # AA 65:123
+Hsap_BTK geneid_v1.0 First 134216 134409 3.06 - 0 gene_5 # AA 1: 65
+Hsap_BTK geneid_v1.0 Single 138576 139844 33.14 + 0 gene_6 # AA 1:423
+Hsap_BTK geneid_v1.0 First 144801 145043 4.49 + 0 gene_7 # AA 1: 81
+Hsap_BTK geneid_v1.0 Internal 170448 170661 4.00 + 0 gene_7 # AA 82:153
+Hsap_BTK geneid_v1.0 Internal 172504 172550 0.78 + 2 gene_7 # AA 153:168
=====================================
debian/tests/test-data/Hsap_BTK_genscan.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_genscan.gff
@@ -0,0 +1,48 @@
+Hsap_BTK genscan Internal 1728 1787 3.51 - 2 gene_1
+Hsap_BTK genscan Internal 2506 2618 9.98 - 0 gene_1
+Hsap_BTK genscan Internal 2813 2917 1.37 - 2 gene_1
+Hsap_BTK genscan Internal 4112 4225 9.90 - 2 gene_1
+Hsap_BTK genscan Internal 8833 8959 2.53 - 1 gene_1
+Hsap_BTK genscan Internal 9956 10143 4.59 - 1 gene_1
+Hsap_BTK genscan Internal 13081 13159 0.31 - 1 gene_1
+Hsap_BTK genscan Internal 17730 17856 6.56 - 2 gene_1
+Hsap_BTK genscan Internal 17964 18024 0.77 - 1 gene_1
+Hsap_BTK genscan First 19296 19551 40.54 - 0 gene_1
+Hsap_BTK genscan Single 74850 75578 36.57 + 2 gene_2
+Hsap_BTK genscan Terminal 76391 76462 2.33 - 1 gene_3
+Hsap_BTK genscan Internal 79700 79857 6.91 - 1 gene_3
+Hsap_BTK genscan Internal 80376 80494 17.29 - 0 gene_3
+Hsap_BTK genscan Internal 81136 81200 6.20 - 2 gene_3
+Hsap_BTK genscan Internal 82558 82813 19.32 - 0 gene_3
+Hsap_BTK genscan Internal 83290 83530 16.69 - 2 gene_3
+Hsap_BTK genscan Internal 84816 84943 6.10 - 0 gene_3
+Hsap_BTK genscan Internal 85123 85202 7.63 - 2 gene_3
+Hsap_BTK genscan Internal 85799 85853 4.26 - 1 gene_3
+Hsap_BTK genscan Internal 86594 86656 3.11 - 0 gene_3
+Hsap_BTK genscan Internal 87074 87261 14.87 - 0 gene_3
+Hsap_BTK genscan Internal 88679 88746 5.41 - 1 gene_3
+Hsap_BTK genscan Internal 89067 89195 10.85 - 0 gene_3
+Hsap_BTK genscan Internal 96504 96585 7.39 - 0 gene_3
+Hsap_BTK genscan Internal 98139 98207 6.66 - 2 gene_3
+Hsap_BTK genscan Internal 101042 101140 7.99 - 1 gene_3
+Hsap_BTK genscan Internal 101650 101820 17.92 - 0 gene_3
+Hsap_BTK genscan First 106115 106198 6.77 - 1 gene_3
+Hsap_BTK genscan First 117154 117294 2.95 + 0 gene_4
+Hsap_BTK genscan Internal 117965 118070 6.87 + 1 gene_4
+Hsap_BTK genscan Internal 118261 118328 8.51 + 2 gene_4
+Hsap_BTK genscan Internal 121841 121963 4.06 + 1 gene_4
+Hsap_BTK genscan Terminal 122234 122254 -4.87 + 1 gene_4
+Hsap_BTK genscan Terminal 124315 124605 0.96 - 0 gene_5
+Hsap_BTK genscan Internal 124876 125073 20.23 - 0 gene_5
+Hsap_BTK genscan Internal 125291 125452 9.55 - 1 gene_5
+Hsap_BTK genscan Internal 127172 127263 3.09 - 1 gene_5
+Hsap_BTK genscan Internal 128138 128315 17.27 - 2 gene_5
+Hsap_BTK genscan Internal 130317 130491 19.62 - 2 gene_5
+Hsap_BTK genscan First 134216 134409 19.12 - 0 gene_5
+Hsap_BTK genscan Single 138495 139844 99.87 + 2 gene_6
+Hsap_BTK genscan First 144486 144647 6.08 + 2 gene_7
+Hsap_BTK genscan Internal 144771 145043 9.81 + 2 gene_7
+Hsap_BTK genscan Internal 170448 170661 9.87 + 2 gene_7
+Hsap_BTK genscan Internal 172504 172550 4.61 + 2 gene_7
+Hsap_BTK genscan Terminal 180179 180394 -3.04 + 1 gene_7
+Hsap_BTK genscan Terminal 185720 185859 3.84 - 1 gene_8
=====================================
debian/tests/test-data/Hsap_BTK_repeatmasker.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_repeatmasker.gff
@@ -0,0 +1,425 @@
+Hsap_BTK RepeatMasker SINE/Alu 1 105 811 + . AluSg/x.1
+Hsap_BTK RepeatMasker LINE/L2 109 263 360 + . L2.2
+Hsap_BTK RepeatMasker LINE/L2 316 560 376 + . L2.3
+Hsap_BTK RepeatMasker DNA/MER2_type 562 610 372 + . MER6B.4
+Hsap_BTK RepeatMasker DNA/MER2_type 611 724 3007 + . MER6B.5
+Hsap_BTK RepeatMasker SINE/Alu 725 1012 1877 - . AluJb.6
+Hsap_BTK RepeatMasker DNA/MER2_type 1013 1492 3007 + . MER6B.7
+Hsap_BTK RepeatMasker LINE/L2 1494 1572 237 + . L2.8
+Hsap_BTK RepeatMasker SINE/Alu 1876 2073 1410 - . AluSg/x.9
+Hsap_BTK RepeatMasker SINE/MIR 2109 2273 526 + . MIR.10
+Hsap_BTK RepeatMasker Simple_repeat 2926 2989 312 + . (CAT)n.11
+Hsap_BTK RepeatMasker SINE/Alu 3354 3682 2096 + . AluSx.12
+Hsap_BTK RepeatMasker SINE/Alu 3683 3976 2148 + . AluSx.13
+Hsap_BTK RepeatMasker SINE/MIR 5635 5664 183 + . MIR.14
+Hsap_BTK RepeatMasker LINE/L1 5688 5845 4831 + . L1MD2.15
+Hsap_BTK RepeatMasker SINE/Alu 5846 6156 2280 + . AluSx.16
+Hsap_BTK RepeatMasker LINE/L1 6157 7816 4831 + . L1MD2.17
+Hsap_BTK RepeatMasker LINE/L2 8026 8130 398 + . L2.18
+Hsap_BTK RepeatMasker SINE/Alu 8392 8691 2441 - . AluSx.19
+Hsap_BTK RepeatMasker SINE/Alu 9272 9567 1923 - . AluJb.20
+Hsap_BTK RepeatMasker SINE/Alu 10855 11170 2306 - . AluSx.21
+Hsap_BTK RepeatMasker Simple_repeat 11368 11404 291 + . (TTTA)n.22
+Hsap_BTK RepeatMasker LINE/L1 11422 11719 3242 - . L1MB4.23
+Hsap_BTK RepeatMasker SINE/Alu 11720 12025 2412 + . AluSx.24
+Hsap_BTK RepeatMasker LINE/L1 12026 12371 3242 - . L1MB4.25
+Hsap_BTK RepeatMasker SINE/Alu 12407 12716 2486 + . AluSg.26
+Hsap_BTK RepeatMasker LINE/L2 12938 13063 357 + . L2.27
+Hsap_BTK RepeatMasker SINE/Alu 14648 14947 2338 - . AluSx.28
+Hsap_BTK RepeatMasker SINE/MIR 15067 15155 252 - . MIR.29
+Hsap_BTK RepeatMasker Low_complexity 15208 15232 25 + . AT_rich.30
+Hsap_BTK RepeatMasker LINE/L1 15267 15389 543 - . L1MA7.31
+Hsap_BTK RepeatMasker scRNA 15431 15517 560 - . HY4.32
+Hsap_BTK RepeatMasker LINE/L1 15518 15955 2303 - . L1MA8.33
+Hsap_BTK RepeatMasker SINE/Alu 16084 16394 2041 - . AluSq.34
+Hsap_BTK RepeatMasker SINE/Alu 16439 16732 1894 + . AluSx.35
+Hsap_BTK RepeatMasker Simple_repeat 16825 16855 183 + . (TA)n.36
+Hsap_BTK RepeatMasker Low_complexity 17203 17224 22 + . AT_rich.37
+Hsap_BTK RepeatMasker Low_complexity 17870 17918 21 + . GC_rich.38
+Hsap_BTK RepeatMasker SINE/Alu 18091 18382 2376 + . AluSc.39
+Hsap_BTK RepeatMasker SINE/Alu 18462 18774 2627 + . AluY.40
+Hsap_BTK RepeatMasker SINE/Alu 18794 18966 1368 + . AluSq.41
+Hsap_BTK RepeatMasker SINE/Alu 20321 20617 2199 + . AluSx.42
+Hsap_BTK RepeatMasker Low_complexity 20619 20727 533 + . GA-rich.43
+Hsap_BTK RepeatMasker LINE/L2 20808 20851 197 - . L2.44
+Hsap_BTK RepeatMasker SINE/MIR 21341 21450 385 - . MIR.45
+Hsap_BTK RepeatMasker LINE/L1 21499 22165 2210 + . L1MA4.46
+Hsap_BTK RepeatMasker SINE/Alu 22166 22281 811 + . FLAM_C.47
+Hsap_BTK RepeatMasker Simple_repeat 22282 22321 360 + . (TAAA)n.48
+Hsap_BTK RepeatMasker LINE/L1 22323 22518 4260 + . L1MA4.49
+Hsap_BTK RepeatMasker SINE/Alu 22519 22867 2138 + . AluSc.50
+Hsap_BTK RepeatMasker LINE/L1 22868 23381 4260 + . L1MA4.51
+Hsap_BTK RepeatMasker Low_complexity 23480 23542 21 + . AT_rich.52
+Hsap_BTK RepeatMasker DNA/MER1_type 23708 23881 465 - . MER5B.53
+Hsap_BTK RepeatMasker SINE/Alu 24311 24602 1577 + . AluJb.54
+Hsap_BTK RepeatMasker Low_complexity 24692 24737 32 + . AT_rich.55
+Hsap_BTK RepeatMasker SINE/MIR 24738 24807 223 - . MIR.56
+Hsap_BTK RepeatMasker LINE/L1 24868 24981 3415 - . L1MB6.57
+Hsap_BTK RepeatMasker DNA/MER2_type 24982 25314 2215 - . MER2.58
+Hsap_BTK RepeatMasker LINE/L1 25315 25885 3415 - . L1MB6.59
+Hsap_BTK RepeatMasker LINE/L1 25888 25931 282 + . L1M.60
+Hsap_BTK RepeatMasker LINE/L1 25957 26167 533 - . L1MB6.61
+Hsap_BTK RepeatMasker SINE/Alu 26168 26338 1020 + . AluSq.62
+Hsap_BTK RepeatMasker LINE/L1 26339 26545 1208 - . L1M4.63
+Hsap_BTK RepeatMasker LINE/L1 26553 27288 8021 - . L1.64
+Hsap_BTK RepeatMasker SINE/Alu 27289 27578 2085 - . AluSg.65
+Hsap_BTK RepeatMasker LINE/L1 27579 27675 8021 - . L1.66
+Hsap_BTK RepeatMasker SINE/Alu 27676 27967 2359 - . AluY.67
+Hsap_BTK RepeatMasker LINE/L1 27968 28764 8021 - . L1.68
+Hsap_BTK RepeatMasker SINE/Alu 28765 29069 2312 - . AluY.69
+Hsap_BTK RepeatMasker LINE/L1 29070 29168 8021 - . L1.70
+Hsap_BTK RepeatMasker SINE/Alu 29169 29476 2184 - . AluSx.71
+Hsap_BTK RepeatMasker LINE/L1 29478 29950 2940 - . L1.72
+Hsap_BTK RepeatMasker SINE/Alu 29951 30254 2103 - . AluSx.73
+Hsap_BTK RepeatMasker LINE/L1 30255 30516 2940 - . L1.74
+Hsap_BTK RepeatMasker LINE/L1 30514 30578 474 + . L1M1.75
+Hsap_BTK RepeatMasker LINE/L1 30578 31648 5114 - . L1.76
+Hsap_BTK RepeatMasker DNA/MER1_type 31769 31880 1031 + . MER3.77
+Hsap_BTK RepeatMasker SINE/Alu 31881 32191 2138 + . AluSx.78
+Hsap_BTK RepeatMasker DNA/MER1_type 32192 32304 1031 + . MER3.79
+Hsap_BTK RepeatMasker SINE/Alu 32491 32788 2145 + . AluSg.80
+Hsap_BTK RepeatMasker LINE/L1 32789 32968 429 - . L1MB6.81
+Hsap_BTK RepeatMasker Simple_repeat 32992 33003 202 + . (TAAAAA)n.82
+Hsap_BTK RepeatMasker LINE/L1 33004 33138 3162 + . L1MA5.83
+Hsap_BTK RepeatMasker SINE/Alu 33139 33431 2173 + . AluSq.84
+Hsap_BTK RepeatMasker LINE/L1 33432 33848 3162 + . L1MA5.85
+Hsap_BTK RepeatMasker Low_complexity 33849 33895 47 + . AT_rich.86
+Hsap_BTK RepeatMasker SINE/Alu 34377 34674 2147 + . AluSx.87
+Hsap_BTK RepeatMasker SINE/Alu 35811 36110 2316 + . AluSg.88
+Hsap_BTK RepeatMasker SINE/Alu 36168 36479 2056 - . AluSx.89
+Hsap_BTK RepeatMasker LINE/L1 36495 36896 2796 - . L1MC/D.90
+Hsap_BTK RepeatMasker SINE/Alu 36897 37206 2327 - . AluSg.91
+Hsap_BTK RepeatMasker LINE/L1 37207 37531 2796 - . L1MC/D.92
+Hsap_BTK RepeatMasker SINE/Alu 37532 37824 2443 - . AluSq.93
+Hsap_BTK RepeatMasker LINE/L1 37825 38219 2796 - . L1MC/D.94
+Hsap_BTK RepeatMasker SINE/Alu 38220 38515 2407 + . AluSp.95
+Hsap_BTK RepeatMasker SINE/Alu 38518 38864 2204 + . AluY.96
+Hsap_BTK RepeatMasker LINE/L1 38865 38877 2796 - . L1MC/D.97
+Hsap_BTK RepeatMasker SINE/Alu 38878 39162 2203 - . AluSx.98
+Hsap_BTK RepeatMasker LINE/L1 39163 39263 2796 - . L1MC/D.99
+Hsap_BTK RepeatMasker LINE/L2 39264 39341 309 - . L2.100
+Hsap_BTK RepeatMasker SINE/Alu 39346 39625 1526 - . AluJo.101
+Hsap_BTK RepeatMasker SINE/Alu 39700 39804 708 + . AluY.102
+Hsap_BTK RepeatMasker SINE/Alu 40384 40682 2356 + . AluSg.103
+Hsap_BTK RepeatMasker SINE/Alu 40778 41076 2412 + . AluSq.104
+Hsap_BTK RepeatMasker LINE/L1 41305 41437 606 + . L1M4.105
+Hsap_BTK RepeatMasker LINE/L1 41451 41694 561 + . L1M4.106
+Hsap_BTK RepeatMasker LINE/L1 41769 42184 850 + . L1M4.107
+Hsap_BTK RepeatMasker Low_complexity 42208 42262 235 + . T-rich.108
+Hsap_BTK RepeatMasker LINE/L1 42268 43127 8221 - . L1MA3.109
+Hsap_BTK RepeatMasker SINE/Alu 43128 43602 2136 - . AluSx.110
+Hsap_BTK RepeatMasker LINE/L1 43603 44486 8221 - . L1MA3.111
+Hsap_BTK RepeatMasker SINE/Alu 44487 44792 2267 - . AluSq.112
+Hsap_BTK RepeatMasker LINE/L1 44793 44893 8221 - . L1MA3.113
+Hsap_BTK RepeatMasker DNA/Mariner 44894 44942 546 - . MADE1.114
+Hsap_BTK RepeatMasker SINE/Alu 44943 45238 2245 + . AluSx.115
+Hsap_BTK RepeatMasker DNA/Mariner 45239 45279 546 - . MADE1.116
+Hsap_BTK RepeatMasker LINE/L1 45280 45856 8221 - . L1MA3.117
+Hsap_BTK RepeatMasker SINE/Alu 45858 46034 1175 - . AluSg/x.118
+Hsap_BTK RepeatMasker SINE/Alu 46035 46325 2389 - . AluY.119
+Hsap_BTK RepeatMasker LINE/L1 46332 47664 6455 - . L1MA3.120
+Hsap_BTK RepeatMasker SINE/Alu 47667 47744 445 + . AluJ/FRAM.121
+Hsap_BTK RepeatMasker LINE/L1 47745 48145 2515 + . L1MA4A.122
+Hsap_BTK RepeatMasker SINE/Alu 48147 48455 2275 + . AluSg.123
+Hsap_BTK RepeatMasker LINE/L1 48466 48754 777 + . L1ME4A.124
+Hsap_BTK RepeatMasker SINE/Alu 48767 49106 2342 + . AluSg.125
+Hsap_BTK RepeatMasker SINE/MIR 49118 49341 524 + . MIR.126
+Hsap_BTK RepeatMasker SINE/Alu 49370 49668 2456 + . AluSq.127
+Hsap_BTK RepeatMasker SINE/MIR 49680 49843 562 - . MIR.128
+Hsap_BTK RepeatMasker LINE/L1 49884 50059 535 + . L1ME4A.129
+Hsap_BTK RepeatMasker SINE/MIR 50062 50101 188 + . MIR.130
+Hsap_BTK RepeatMasker LINE/L1 50175 50226 1715 - . L1MEd.131
+Hsap_BTK RepeatMasker SINE/Alu 50227 50538 2291 - . AluSg.132
+Hsap_BTK RepeatMasker LINE/L1 50539 50827 1715 - . L1MEd.133
+Hsap_BTK RepeatMasker LINE/L1 50828 50903 979 + . L1PB3.134
+Hsap_BTK RepeatMasker SINE/Alu 50904 51202 2335 + . AluSq.135
+Hsap_BTK RepeatMasker LINE/L1 51203 51326 979 + . L1PB3.136
+Hsap_BTK RepeatMasker LINE/L1 51327 51905 1715 - . L1MEd.137
+Hsap_BTK RepeatMasker snRNA 51910 52012 751 + . U6.138
+Hsap_BTK RepeatMasker LINE/L1 52042 52541 15462 + . L1PB1.139
+Hsap_BTK RepeatMasker SINE/Alu 52542 52857 2353 + . AluSx.140
+Hsap_BTK RepeatMasker LINE/L1 52858 53984 15462 + . L1PB1.141
+Hsap_BTK RepeatMasker SINE/Alu 53985 54296 2438 + . AluY.142
+Hsap_BTK RepeatMasker LINE/L1 54297 54320 15462 + . L1PB1.143
+Hsap_BTK RepeatMasker SINE/Alu 54321 54616 2429 + . AluSp.144
+Hsap_BTK RepeatMasker LINE/L1 54617 55240 15462 + . L1PB1.145
+Hsap_BTK RepeatMasker SINE/Alu 55241 55535 2343 - . AluSp.146
+Hsap_BTK RepeatMasker LINE/L1 55536 55750 15462 + . L1PB1.147
+Hsap_BTK RepeatMasker SINE/Alu 55751 56060 2257 + . AluSq.148
+Hsap_BTK RepeatMasker LINE/L1 56061 56345 15462 + . L1PB1.149
+Hsap_BTK RepeatMasker SINE/Alu 56346 56643 2361 - . AluSg.150
+Hsap_BTK RepeatMasker LINE/L1 56644 57835 15462 + . L1PB1.151
+Hsap_BTK RepeatMasker SINE/Alu 57836 58134 2335 + . AluSq.152
+Hsap_BTK RepeatMasker SINE/Alu 58136 58450 2320 + . AluSg.153
+Hsap_BTK RepeatMasker LINE/L1 58451 58717 15462 + . L1PB1.154
+Hsap_BTK RepeatMasker SINE/Alu 58718 59018 2181 + . AluSp.155
+Hsap_BTK RepeatMasker LINE/L1 59019 61369 15462 + . L1PB1.156
+Hsap_BTK RepeatMasker LINE/L1 61478 61661 855 - . L1MEd.157
+Hsap_BTK RepeatMasker LINE/L2 61984 62073 201 - . L2.158
+Hsap_BTK RepeatMasker SINE/Alu 62251 62555 2374 - . AluY.159
+Hsap_BTK RepeatMasker LINE/L2 62870 62936 244 + . L2.160
+Hsap_BTK RepeatMasker SINE/Alu 63066 63370 2036 - . AluSx.161
+Hsap_BTK RepeatMasker SINE/Alu 63381 63697 1950 - . AluSx.162
+Hsap_BTK RepeatMasker SINE/Alu 64006 64142 945 + . AluSg/x.163
+Hsap_BTK RepeatMasker SINE/Alu 64163 64275 546 + . FLAM_C.164
+Hsap_BTK RepeatMasker Low_complexity 64550 64611 209 + . CT-rich.165
+Hsap_BTK RepeatMasker SINE/Alu 64841 65133 2619 + . AluY.166
+Hsap_BTK RepeatMasker SINE/Alu 65238 65537 2233 + . AluSg.167
+Hsap_BTK RepeatMasker DNA/MER1_type? 65734 65883 1146 + . MER96B.168
+Hsap_BTK RepeatMasker SINE/Alu 65884 66192 2418 + . AluY.169
+Hsap_BTK RepeatMasker DNA/MER1_type? 66193 66300 1146 + . MER96B.170
+Hsap_BTK RepeatMasker SINE/Alu 66487 66738 1994 + . AluSx.171
+Hsap_BTK RepeatMasker SINE/Alu 66793 66954 1274 + . AluSg/x.172
+Hsap_BTK RepeatMasker Simple_repeat 66955 67093 247 + . (TA)n.173
+Hsap_BTK RepeatMasker SINE/Alu 67713 67880 1353 + . AluSp.174
+Hsap_BTK RepeatMasker Low_complexity 68069 68103 21 + . AT_rich.175
+Hsap_BTK RepeatMasker LTR/ERVL 68388 68469 674 + . MLT2A1.176
+Hsap_BTK RepeatMasker SINE/Alu 68549 68601 350 + . Alu.177
+Hsap_BTK RepeatMasker SINE/Alu 69362 69642 2254 + . AluSc.178
+Hsap_BTK RepeatMasker Low_complexity 69644 69685 28 + . AT_rich.179
+Hsap_BTK RepeatMasker SINE/Alu 69734 70030 2021 - . AluJb.180
+Hsap_BTK RepeatMasker LINE/L2 70187 70368 975 + . L2.181
+Hsap_BTK RepeatMasker SINE/Alu 70369 70655 2134 - . AluSx.182
+Hsap_BTK RepeatMasker LINE/L2 70656 70826 975 + . L2.183
+Hsap_BTK RepeatMasker SINE/Alu 70827 71135 2197 - . AluY.184
+Hsap_BTK RepeatMasker LINE/L2 71136 71425 975 + . L2.185
+Hsap_BTK RepeatMasker SINE/Alu 71460 71758 2577 + . AluSg.186
+Hsap_BTK RepeatMasker SINE/MIR 73347 73473 531 - . MIR.187
+Hsap_BTK RepeatMasker SINE/Alu 73768 74060 2048 - . AluSx.188
+Hsap_BTK RepeatMasker Simple_repeat 76908 76930 207 + . (T)n.189
+Hsap_BTK RepeatMasker SINE/Alu 76956 77252 2263 - . AluSx.190
+Hsap_BTK RepeatMasker DNA/MER1_type 77391 77510 424 + . MER5B.191
+Hsap_BTK RepeatMasker SINE/Alu 77511 77799 2156 - . AluSg.192
+Hsap_BTK RepeatMasker DNA/MER1_type 77800 77859 424 + . MER5B.193
+Hsap_BTK RepeatMasker SINE/Alu 78388 78687 2530 + . AluY.194
+Hsap_BTK RepeatMasker SINE/Alu 78989 79122 2343 + . AluSx.195
+Hsap_BTK RepeatMasker SINE/Alu 79123 79422 2343 + . AluSx.196
+Hsap_BTK RepeatMasker LINE/L2 80034 80152 271 + . L2.197
+Hsap_BTK RepeatMasker Low_complexity 80738 80794 220 + . CT-rich.198
+Hsap_BTK RepeatMasker SINE/Alu 81503 81821 2188 + . AluSx.199
+Hsap_BTK RepeatMasker DNA/MER1_type 81911 82206 569 - . MER102b.200
+Hsap_BTK RepeatMasker LINE/L2 84456 84568 239 + . L2.201
+Hsap_BTK RepeatMasker SINE/Alu 85362 85665 2512 + . AluSx.202
+Hsap_BTK RepeatMasker Simple_repeat 86386 86542 501 + . (TA)n.203
+Hsap_BTK RepeatMasker DNA/MER1_type 87414 87463 446 + . MER5B.204
+Hsap_BTK RepeatMasker SINE/Alu 87464 87746 1859 + . AluSx.205
+Hsap_BTK RepeatMasker DNA/MER1_type 87747 87875 446 + . MER5B.206
+Hsap_BTK RepeatMasker SINE/MIR 87917 87960 197 + . MIR.207
+Hsap_BTK RepeatMasker SINE/Alu 88139 88427 2113 + . AluSg.208
+Hsap_BTK RepeatMasker DNA/MER1_type 88814 88993 400 - . MER91A.209
+Hsap_BTK RepeatMasker SINE/Alu 89945 90234 2251 + . AluSg.210
+Hsap_BTK RepeatMasker SINE/Alu 90394 90559 614 - . FLAM_A.211
+Hsap_BTK RepeatMasker SINE/Alu 90633 90945 2235 + . AluSq.212
+Hsap_BTK RepeatMasker DNA/MER1_type? 91179 91253 701 + . MER97c.213
+Hsap_BTK RepeatMasker SINE/Alu 91254 91549 2178 - . AluSg.214
+Hsap_BTK RepeatMasker DNA/MER1_type? 91550 91656 701 + . MER97c.215
+Hsap_BTK RepeatMasker SINE/Alu 92511 92806 2071 + . AluSx.216
+Hsap_BTK RepeatMasker LINE/L1 92807 92948 411 - . L1ME3.217
+Hsap_BTK RepeatMasker SINE/Alu 93468 93776 2307 + . AluSx.218
+Hsap_BTK RepeatMasker SINE/Alu 93861 94192 2276 + . AluSq.219
+Hsap_BTK RepeatMasker LINE/L2 94389 94499 239 - . L2.220
+Hsap_BTK RepeatMasker SINE/MIR 94526 94739 874 + . MIR.221
+Hsap_BTK RepeatMasker SINE/MIR 94939 95177 893 + . MIR.222
+Hsap_BTK RepeatMasker SINE/MIR 95195 95277 296 + . MIR.223
+Hsap_BTK RepeatMasker SINE/MIR 95754 95964 466 - . MIR.224
+Hsap_BTK RepeatMasker Low_complexity 96282 96460 339 + . CT-rich.225
+Hsap_BTK RepeatMasker LINE/L2 97190 97271 205 - . L2.226
+Hsap_BTK RepeatMasker Low_complexity 97297 97320 24 + . AT_rich.227
+Hsap_BTK RepeatMasker LINE/L1 98800 98959 1439 + . L1ME4A.228
+Hsap_BTK RepeatMasker SINE/Alu 98960 99246 2409 - . AluSg.229
+Hsap_BTK RepeatMasker LINE/L1 99247 99307 1439 + . L1ME4A.230
+Hsap_BTK RepeatMasker SINE/Alu 99308 99617 2211 + . AluSx.231
+Hsap_BTK RepeatMasker LINE/L1 99618 100252 1439 + . L1ME4A.232
+Hsap_BTK RepeatMasker SINE/Alu 100276 100580 2313 + . AluSx.233
+Hsap_BTK RepeatMasker SINE/Alu 102853 103165 2412 + . AluSq.234
+Hsap_BTK RepeatMasker SINE/Alu 104590 104889 2388 - . AluSx.235
+Hsap_BTK RepeatMasker Simple_repeat 105027 105070 342 + . (CA)n.236
+Hsap_BTK RepeatMasker SINE/Alu 105400 105692 2190 + . AluSq.237
+Hsap_BTK RepeatMasker SINE/MIR 105957 106056 245 - . MIR.238
+Hsap_BTK RepeatMasker SINE/Alu 106624 106913 1967 - . AluJb.239
+Hsap_BTK RepeatMasker SINE/Alu 107237 107539 2032 + . AluSp.240
+Hsap_BTK RepeatMasker LINE/L1 107540 107772 526 - . L1ME3A.241
+Hsap_BTK RepeatMasker SINE/Alu 108254 108567 2426 + . AluSg.242
+Hsap_BTK RepeatMasker SINE/Alu 108818 108997 878 - . AluSg/x.243
+Hsap_BTK RepeatMasker SINE/Alu 108998 109060 381 - . Alu.244
+Hsap_BTK RepeatMasker SINE/Alu 109390 109534 693 + . FLAM_A.245
+Hsap_BTK RepeatMasker Simple_repeat 109714 109748 261 + . (TATG)n.246
+Hsap_BTK RepeatMasker LINE/L1 109866 109974 345 - . L1ME3A.247
+Hsap_BTK RepeatMasker SINE/Alu 110826 111142 2438 + . AluSp.248
+Hsap_BTK RepeatMasker SINE/MIR 111500 111587 447 - . MIR.249
+Hsap_BTK RepeatMasker Low_complexity 111743 111839 252 + . GA-rich.250
+Hsap_BTK RepeatMasker LINE/L1 113672 113696 624 - . L1PA9.251
+Hsap_BTK RepeatMasker Simple_repeat 113697 113723 189 + . (CAAA)n.252
+Hsap_BTK RepeatMasker LINE/L1 113724 113812 624 - . L1PA9.253
+Hsap_BTK RepeatMasker SINE/Alu 113854 114157 2134 - . AluJb.254
+Hsap_BTK RepeatMasker SINE/Alu 114377 114669 2515 - . AluY.255
+Hsap_BTK RepeatMasker LINE/CR1 114868 115467 1194 + . L3.256
+Hsap_BTK RepeatMasker LINE/L1 115509 115765 1417 + . L1MA9.257
+Hsap_BTK RepeatMasker SINE/MIR 116220 116479 909 + . MIR.258
+Hsap_BTK RepeatMasker SINE/MIR 116499 116710 674 + . MIR.259
+Hsap_BTK RepeatMasker LINE/L2 116974 117043 303 + . L2.260
+Hsap_BTK RepeatMasker LINE/L1 119163 119346 3599 + . L1MA1.261
+Hsap_BTK RepeatMasker SINE/Alu 119347 119652 2250 + . AluSx.262
+Hsap_BTK RepeatMasker LINE/L1 119653 120027 3599 + . L1MA1.263
+Hsap_BTK RepeatMasker LINE/L1 120018 120511 2231 + . L1MC3.264
+Hsap_BTK RepeatMasker SINE/Alu 120554 120857 2102 + . AluSq.265
+Hsap_BTK RepeatMasker SINE/Alu 120944 121054 691 - . AluJb.266
+Hsap_BTK RepeatMasker Simple_repeat 121213 121296 377 + . (TA)n.267
+Hsap_BTK RepeatMasker SINE/Alu 121297 121594 2179 - . AluSg.268
+Hsap_BTK RepeatMasker SINE/Alu 122818 123101 1278 - . AluJo.269
+Hsap_BTK RepeatMasker SINE/Alu 123181 123478 2081 - . AluSq.270
+Hsap_BTK RepeatMasker SINE/Alu 123667 123959 2058 - . AluSx.271
+Hsap_BTK RepeatMasker SINE/Alu 123960 124242 2130 - . AluSx.272
+Hsap_BTK RepeatMasker SINE/Alu 125791 126076 2291 + . AluSx.273
+Hsap_BTK RepeatMasker LINE/L2 126161 126995 905 - . L2.274
+Hsap_BTK RepeatMasker LINE/L2 126996 127054 243 - . L2.275
+Hsap_BTK RepeatMasker SINE/Alu 127331 127641 2036 - . AluSx.276
+Hsap_BTK RepeatMasker LTR/ERV1 128629 128988 787 + . MER31B.277
+Hsap_BTK RepeatMasker SINE/Alu 128989 129278 2393 + . AluSg.278
+Hsap_BTK RepeatMasker LTR/ERV1 129279 129325 787 + . MER31B.279
+Hsap_BTK RepeatMasker SINE/Alu 129524 129825 2573 + . AluY.280
+Hsap_BTK RepeatMasker SINE/Alu 129924 130234 2404 - . AluSq.281
+Hsap_BTK RepeatMasker LINE/L1 130885 131048 231 + . L1M4.282
+Hsap_BTK RepeatMasker SINE/Alu 131065 131373 2227 - . AluSx.283
+Hsap_BTK RepeatMasker SINE/Alu 131462 131768 2426 + . AluSp.284
+Hsap_BTK RepeatMasker SINE/Alu 132145 132433 2142 + . AluSx.285
+Hsap_BTK RepeatMasker SINE/Alu 132438 132738 2263 + . AluY.286
+Hsap_BTK RepeatMasker SINE/MIR 132741 132824 248 - . MIR.287
+Hsap_BTK RepeatMasker LINE/L1 132839 133039 437 + . L1ME4A.288
+Hsap_BTK RepeatMasker SINE/MIR 133391 133465 180 - . MIR.289
+Hsap_BTK RepeatMasker LTR/ERV1 133846 133897 400 + . MER66B.290
+Hsap_BTK RepeatMasker Low_complexity 133915 133991 391 + . GA-rich.291
+Hsap_BTK RepeatMasker LINE/L2 135763 135804 230 + . L2.292
+Hsap_BTK RepeatMasker LINE/L1 136223 136556 445 - . L1ME4A.293
+Hsap_BTK RepeatMasker LINE/L1 136547 136672 278 - . L1ME4A.294
+Hsap_BTK RepeatMasker LINE/L1 136712 136807 255 - . L1ME4A.295
+Hsap_BTK RepeatMasker LINE/L2 137160 137238 196 + . L2.296
+Hsap_BTK RepeatMasker SINE/Alu 137911 138220 2396 - . AluSq.297
+Hsap_BTK RepeatMasker LINE/L1 140724 141045 413 - . L1ME.298
+Hsap_BTK RepeatMasker DNA/MER1_type 141353 141512 707 - . MER5A.299
+Hsap_BTK RepeatMasker DNA/MER1_type 142587 142737 322 + . MER5A.300
+Hsap_BTK RepeatMasker SINE/Alu 142738 143027 1950 - . AluJo.301
+Hsap_BTK RepeatMasker DNA/MER1_type 143028 143081 322 + . MER5A.302
+Hsap_BTK RepeatMasker LTR/ERV1 143541 143925 1798 - . MER83.303
+Hsap_BTK RepeatMasker LTR/ERV1 143925 144034 777 - . MER83.304
+Hsap_BTK RepeatMasker SINE/MIR 144395 144431 188 - . MIR.305
+Hsap_BTK RepeatMasker LINE/L2 145299 145354 218 + . L2.306
+Hsap_BTK RepeatMasker LINE/L1 145807 145980 736 + . L1MB8.307
+Hsap_BTK RepeatMasker LTR/ERV1 146097 146483 1661 + . MER31B.308
+Hsap_BTK RepeatMasker SINE/Alu 146587 146888 2314 + . AluSg.309
+Hsap_BTK RepeatMasker LINE/L2 146903 147161 338 - . L2.310
+Hsap_BTK RepeatMasker LINE/L2 147298 147421 394 - . L2.311
+Hsap_BTK RepeatMasker SINE/Alu 147422 147739 2481 + . AluSp.312
+Hsap_BTK RepeatMasker LINE/L2 147740 147959 394 - . L2.313
+Hsap_BTK RepeatMasker LTR/MaLR 147990 148335 820 - . MSTD.314
+Hsap_BTK RepeatMasker LTR/ERV1 148336 148497 3173 - . LTR8.315
+Hsap_BTK RepeatMasker SINE/Alu 148498 148822 2360 - . AluSx.316
+Hsap_BTK RepeatMasker LTR/ERV1 148823 149379 3173 - . LTR8.317
+Hsap_BTK RepeatMasker LTR/MaLR 149380 149428 820 - . MSTD.318
+Hsap_BTK RepeatMasker SINE/Alu 149429 149711 2211 - . AluSx.319
+Hsap_BTK RepeatMasker LTR/MaLR 149712 149769 820 - . MSTD.320
+Hsap_BTK RepeatMasker LTR/ERV1 149770 149849 4137 + . MER21B.321
+Hsap_BTK RepeatMasker SINE/Alu 149850 150153 2347 + . AluSq.322
+Hsap_BTK RepeatMasker LTR/ERV1 150154 150358 4137 + . MER21B.323
+Hsap_BTK RepeatMasker SINE/Alu 150359 150668 2280 - . AluSp.324
+Hsap_BTK RepeatMasker LTR/ERV1 150669 151201 4137 + . MER21B.325
+Hsap_BTK RepeatMasker LINE/L2 151221 151899 1516 - . L2.326
+Hsap_BTK RepeatMasker SINE/Alu 151900 152200 2500 - . AluSq.327
+Hsap_BTK RepeatMasker LINE/L2 152201 152325 1516 - . L2.328
+Hsap_BTK RepeatMasker SINE/Alu 152326 152628 1926 - . AluJo.329
+Hsap_BTK RepeatMasker LINE/L2 152629 153125 1516 - . L2.330
+Hsap_BTK RepeatMasker SINE/MIR 153123 153353 699 - . MIR.331
+Hsap_BTK RepeatMasker LTR/MaLR 153740 153890 2987 - . MSTB2.332
+Hsap_BTK RepeatMasker SINE/Alu 153891 154186 2228 - . AluSx.333
+Hsap_BTK RepeatMasker LTR/MaLR 154187 154507 2987 - . MSTB2.334
+Hsap_BTK RepeatMasker LINE/L1 154510 155040 2014 + . L1ME2.335
+Hsap_BTK RepeatMasker SINE/Alu 155370 155665 1895 - . AluJb.336
+Hsap_BTK RepeatMasker SINE/MIR 155700 155838 547 + . MIR.337
+Hsap_BTK RepeatMasker SINE/Alu 155839 156141 2450 - . AluSq.338
+Hsap_BTK RepeatMasker SINE/MIR 156142 156184 547 + . MIR.339
+Hsap_BTK RepeatMasker LINE/L2 157238 157300 279 - . L2.340
+Hsap_BTK RepeatMasker SINE/Alu 158054 158348 2494 - . AluY.341
+Hsap_BTK RepeatMasker SINE/Alu 158887 159173 2193 + . AluSg.342
+Hsap_BTK RepeatMasker Simple_repeat 159178 159319 690 + . (TA)n.343
+Hsap_BTK RepeatMasker LINE/L1 159320 159392 225 + . L1MCa.344
+Hsap_BTK RepeatMasker Simple_repeat 159431 159608 699 + . (TA)n.345
+Hsap_BTK RepeatMasker LINE/L1 159611 159674 232 - . L1MCa.346
+Hsap_BTK RepeatMasker Simple_repeat 159675 159717 215 + . (CATATA)n.347
+Hsap_BTK RepeatMasker Simple_repeat 159722 159900 690 + . (TA)n.348
+Hsap_BTK RepeatMasker Simple_repeat 159901 159960 253 + . (CATA)n.349
+Hsap_BTK RepeatMasker SINE/MIR 160002 160190 399 + . MIR.350
+Hsap_BTK RepeatMasker SINE/Alu 160454 160749 1860 - . AluSx.351
+Hsap_BTK RepeatMasker SINE/Alu 160758 161051 2108 - . AluSg.352
+Hsap_BTK RepeatMasker Simple_repeat 161112 161158 231 + . (TTTA)n.353
+Hsap_BTK RepeatMasker LINE/L1 161159 164788 44733 - . L1PA4.354
+Hsap_BTK RepeatMasker SINE/Alu 164789 165083 2259 + . AluY.355
+Hsap_BTK RepeatMasker LINE/L1 165084 167628 44733 - . L1PA4.356
+Hsap_BTK RepeatMasker SINE/MIR 167633 167877 581 - . MIR.357
+Hsap_BTK RepeatMasker Simple_repeat 168062 168115 231 + . (CA)n.358
+Hsap_BTK RepeatMasker DNA/MER1_type 168314 168489 708 + . MER5A.359
+Hsap_BTK RepeatMasker LTR/MaLR 169297 169356 1234 + . MLT1A1.360
+Hsap_BTK RepeatMasker SINE/Alu 169357 169660 2450 + . AluY.361
+Hsap_BTK RepeatMasker LTR/MaLR 169661 170001 1234 + . MLT1A1.362
+Hsap_BTK RepeatMasker LTR/MaLR 170716 170767 273 + . MLT1A1.363
+Hsap_BTK RepeatMasker LTR/ERV1 170758 171180 1655 + . MER31B.364
+Hsap_BTK RepeatMasker LINE/L1 171191 171423 1338 - . L1MA9.365
+Hsap_BTK RepeatMasker LTR/MaLR 173013 173179 2460 - . MLT1F1.366
+Hsap_BTK RepeatMasker SINE/Alu 173180 173473 2277 + . AluSg.367
+Hsap_BTK RepeatMasker LTR/MaLR 173474 173835 2460 - . MLT1F1.368
+Hsap_BTK RepeatMasker LINE/L2 173865 173953 340 - . L2.369
+Hsap_BTK RepeatMasker LINE/L1 174205 175084 6620 - . L1MA2.370
+Hsap_BTK RepeatMasker SINE/Alu 175087 175399 2268 - . AluSg.371
+Hsap_BTK RepeatMasker SINE/Alu 175409 175709 2056 - . AluSx.372
+Hsap_BTK RepeatMasker LINE/L1 175723 178165 7276 - . L1M1.373
+Hsap_BTK RepeatMasker LTR/ERV1 178330 178900 2958 - . LTR24B.374
+Hsap_BTK RepeatMasker SINE/Alu 179050 179361 2241 - . AluSx.375
+Hsap_BTK RepeatMasker Simple_repeat 179374 179396 207 + . (TTA)n.376
+Hsap_BTK RepeatMasker SINE/MIR 179463 179622 458 - . MIR.377
+Hsap_BTK RepeatMasker DNA/MER1_type 179886 180038 438 - . MER5A.378
+Hsap_BTK RepeatMasker LINE/L2 180507 180664 241 - . L2.379
+Hsap_BTK RepeatMasker DNA/MER1_type 180665 180772 1070 + . MER63A.380
+Hsap_BTK RepeatMasker SINE/Alu 180773 181091 2482 - . AluY.381
+Hsap_BTK RepeatMasker DNA/MER1_type 181092 181204 1070 + . MER63A.382
+Hsap_BTK RepeatMasker LINE/L2 181205 181230 241 - . L2.383
+Hsap_BTK RepeatMasker LTR/MaLR 181231 181595 1717 - . MLT1A1.384
+Hsap_BTK RepeatMasker LINE/L2 181596 181731 241 - . L2.385
+Hsap_BTK RepeatMasker LINE/L1 182165 183056 4877 - . L1PA16.386
+Hsap_BTK RepeatMasker LINE/L1 183080 183174 317 - . L1MC5.387
+Hsap_BTK RepeatMasker Low_complexity 183396 183449 62 + . AT_rich.388
+Hsap_BTK RepeatMasker SINE/Alu 183450 183578 808 - . FLAM_A.389
+Hsap_BTK RepeatMasker Low_complexity 183579 183596 62 + . AT_rich.390
+Hsap_BTK RepeatMasker LINE/L1 183598 183958 1605 - . L1MC5.391
+Hsap_BTK RepeatMasker SINE/Alu 183959 184245 2048 + . AluSx.392
+Hsap_BTK RepeatMasker LINE/L1 184246 184260 1605 - . L1MC5.393
+Hsap_BTK RepeatMasker SINE/Alu 184261 184547 2182 - . AluSx.394
+Hsap_BTK RepeatMasker LINE/L1 184548 184833 1605 - . L1MC5.395
+Hsap_BTK RepeatMasker SINE/Alu 185041 185292 2003 - . AluSq.396
+Hsap_BTK RepeatMasker Simple_repeat 185372 185412 196 + . (TAAAA)n.397
+Hsap_BTK RepeatMasker DNA/MER1_type 186400 186578 991 - . MER5A.398
+Hsap_BTK RepeatMasker Low_complexity 187129 187187 24 + . AT_rich.399
+Hsap_BTK RepeatMasker LTR/MaLR 187322 187410 394 + . MLT1E.400
+Hsap_BTK RepeatMasker LINE/L1 187563 188280 3505 - . L1MB3.401
+Hsap_BTK RepeatMasker Low_complexity 188281 188375 32 + . AT_rich.402
+Hsap_BTK RepeatMasker SINE/Alu 188867 189169 2374 + . AluSc.403
+Hsap_BTK RepeatMasker SINE/MIR 190006 190089 271 - . MIR.404
+Hsap_BTK RepeatMasker SINE/Alu 190251 190563 1719 - . AluSx.405
+Hsap_BTK RepeatMasker SINE/Alu 190597 190905 2122 + . AluSq.406
+Hsap_BTK RepeatMasker LINE/L1 191489 192382 1426 + . L1ME1.407
+Hsap_BTK RepeatMasker LINE/L1 192386 192711 985 + . L1ME1.408
+Hsap_BTK RepeatMasker LINE/L1 192716 193388 3355 + . L1ME1.409
+Hsap_BTK RepeatMasker DNA/MER1_type 193444 193536 290 + . MER91A.410
+Hsap_BTK RepeatMasker Low_complexity 193558 193601 23 + . AT_rich.411
+Hsap_BTK RepeatMasker SINE/Alu 193664 193956 2067 - . AluSx.412
+Hsap_BTK RepeatMasker LINE/L1 194131 194347 348 - . L1MC4a.413
+Hsap_BTK RepeatMasker LINE/L1 194641 194785 621 + . L1ME4A.414
+Hsap_BTK RepeatMasker SINE/Alu 194786 195095 2124 - . AluJb.415
+Hsap_BTK RepeatMasker LINE/L1 195096 195107 621 + . L1ME4A.416
+Hsap_BTK RepeatMasker SINE/Alu 195108 195345 1727 - . AluY.417
+Hsap_BTK RepeatMasker LINE/L1 195346 195746 621 + . L1ME4A.418
+Hsap_BTK RepeatMasker LINE/L1 195737 196070 738 + . L1ME4A.419
+Hsap_BTK RepeatMasker LINE/L1 196074 196231 3147 - . L1ME2.420
+Hsap_BTK RepeatMasker LTR/ERV1 196232 196675 2716 + . MER66A.421
+Hsap_BTK RepeatMasker LINE/L1 196676 196810 3147 - . L1ME2.422
+Hsap_BTK RepeatMasker SINE/Alu 196811 197124 2013 - . AluSx.423
+Hsap_BTK RepeatMasker LINE/L1 197125 197948 3147 - . L1ME2.424
+Hsap_BTK RepeatMasker LINE/L1 198051 200200 16509 + . L1P.425
=====================================
debian/tests/test-data/Hsap_BTK_sgp3X.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_sgp3X.gff
@@ -0,0 +1,38 @@
+Hsap_BTK SGP.3X Internal 4565 4627 8.56 - 0 gene_1 # AA 149:169
+Hsap_BTK SGP.3X Internal 9956 10143 23.75 - 2 gene_1 # AA 86:148
+Hsap_BTK SGP.3X First 19296 19551 15.97 - 0 gene_1 # AA 1: 86
+Hsap_BTK SGP.3X First 62698 62700 -9.86 + 0 gene_2 # AA 1: 1
+Hsap_BTK SGP.3X Terminal 67179 67508 54.90 + 0 gene_2 # AA 2:111
+Hsap_BTK SGP.3X Terminal 73005 73235 25.73 - 0 gene_3 # AA 75:151
+Hsap_BTK SGP.3X First 74949 75170 18.73 - 0 gene_3 # AA 1: 74
+Hsap_BTK SGP.3X Terminal 79661 79857 26.63 - 2 gene_4 # AA 643:708
+Hsap_BTK SGP.3X Internal 80376 80494 21.80 - 1 gene_4 # AA 603:643
+Hsap_BTK SGP.3X Internal 81136 81200 -1.59 - 0 gene_4 # AA 582:603
+Hsap_BTK SGP.3X Internal 82558 82813 51.33 - 1 gene_4 # AA 496:581
+Hsap_BTK SGP.3X Internal 83290 83533 36.85 - 2 gene_4 # AA 415:496
+Hsap_BTK SGP.3X Internal 84015 84089 4.73 - 2 gene_4 # AA 390:415
+Hsap_BTK SGP.3X Internal 84816 84943 22.24 - 1 gene_4 # AA 347:390
+Hsap_BTK SGP.3X Internal 85123 85202 -0.04 - 0 gene_4 # AA 321:347
+Hsap_BTK SGP.3X Internal 85799 85853 7.75 - 1 gene_4 # AA 302:320
+Hsap_BTK SGP.3X Internal 86594 86656 13.00 - 1 gene_4 # AA 281:302
+Hsap_BTK SGP.3X Internal 87074 87261 30.63 - 0 gene_4 # AA 219:281
+Hsap_BTK SGP.3X Internal 88679 88746 2.93 - 2 gene_4 # AA 196:218
+Hsap_BTK SGP.3X Internal 89067 89195 23.15 - 2 gene_4 # AA 153:196
+Hsap_BTK SGP.3X Internal 96504 96585 8.97 - 0 gene_4 # AA 126:153
+Hsap_BTK SGP.3X Internal 98139 98207 0.53 - 0 gene_4 # AA 103:125
+Hsap_BTK SGP.3X Internal 101042 101140 16.57 - 0 gene_4 # AA 70:102
+Hsap_BTK SGP.3X First 101650 101856 25.46 - 0 gene_4 # AA 1: 69
+Hsap_BTK SGP.3X First 117550 117552 -2.98 + 0 gene_5 # AA 1: 1
+Hsap_BTK SGP.3X Internal 117965 118070 22.92 + 0 gene_5 # AA 2: 37
+Hsap_BTK SGP.3X Internal 118261 118328 16.58 + 2 gene_5 # AA 37: 59
+Hsap_BTK SGP.3X Internal 121841 121963 15.59 + 0 gene_5 # AA 60:100
+Hsap_BTK SGP.3X Terminal 122234 122254 -4.89 + 0 gene_5 # AA 101:107
+Hsap_BTK SGP.3X Terminal 124315 124605 22.92 - 0 gene_6 # AA 299:395
+Hsap_BTK SGP.3X Internal 124876 125073 18.14 - 0 gene_6 # AA 233:298
+Hsap_BTK SGP.3X Internal 125291 125439 21.75 - 2 gene_6 # AA 183:232
+Hsap_BTK SGP.3X Internal 128138 128315 26.47 - 0 gene_6 # AA 124:183
+Hsap_BTK SGP.3X Internal 130317 130491 29.80 - 1 gene_6 # AA 65:123
+Hsap_BTK SGP.3X First 134216 134409 27.80 - 0 gene_6 # AA 1: 65
+Hsap_BTK SGP.3X Single 138495 139844 385.08 + 0 gene_7 # AA 1:450
+Hsap_BTK SGP.3X First 143504 143527 -6.11 + 0 gene_8 # AA 1: 8
+Hsap_BTK SGP.3X Terminal 170195 170470 60.77 + 0 gene_8 # AA 9:100
=====================================
debian/tests/test-data/Hsap_BTK_sgpFO.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_sgpFO.gff
@@ -0,0 +1,38 @@
+Hsap_BTK SGP.homol Internal 2506 2618 3.13 - 2 gene_1 # AA 86:123
+Hsap_BTK SGP.homol First 19296 19551 15.97 - 0 gene_1 # AA 1: 86
+Hsap_BTK SGP.homol Terminal 73005 73166 23.20 - 0 gene_2 # AA 45: 98
+Hsap_BTK SGP.homol First 75039 75170 14.19 - 0 gene_2 # AA 1: 44
+Hsap_BTK SGP.homol Terminal 76391 76462 7.44 - 0 gene_3 # AA 692:715
+Hsap_BTK SGP.homol Internal 79700 79857 27.01 - 2 gene_3 # AA 639:691
+Hsap_BTK SGP.homol Internal 80376 80494 22.45 - 1 gene_3 # AA 599:639
+Hsap_BTK SGP.homol Internal 81136 81200 8.61 - 0 gene_3 # AA 578:599
+Hsap_BTK SGP.homol Internal 82558 82774 44.53 - 1 gene_3 # AA 505:577
+Hsap_BTK SGP.homol Internal 83290 83533 36.85 - 2 gene_3 # AA 424:505
+Hsap_BTK SGP.homol Internal 84015 84089 4.73 - 2 gene_3 # AA 399:424
+Hsap_BTK SGP.homol Internal 84816 84943 22.49 - 1 gene_3 # AA 356:399
+Hsap_BTK SGP.homol Internal 85123 85202 -0.04 - 0 gene_3 # AA 330:356
+Hsap_BTK SGP.homol Internal 85799 85853 7.75 - 1 gene_3 # AA 311:329
+Hsap_BTK SGP.homol Internal 86594 86656 13.00 - 1 gene_3 # AA 290:311
+Hsap_BTK SGP.homol Internal 87074 87261 30.63 - 0 gene_3 # AA 228:290
+Hsap_BTK SGP.homol Internal 88679 88746 2.93 - 2 gene_3 # AA 205:227
+Hsap_BTK SGP.homol Internal 89067 89195 23.15 - 2 gene_3 # AA 162:205
+Hsap_BTK SGP.homol Internal 96504 96585 8.97 - 0 gene_3 # AA 135:162
+Hsap_BTK SGP.homol Internal 98139 98207 9.18 - 0 gene_3 # AA 112:134
+Hsap_BTK SGP.homol Internal 101042 101140 16.57 - 0 gene_3 # AA 79:111
+Hsap_BTK SGP.homol Internal 101650 101839 30.76 - 1 gene_3 # AA 15: 78
+Hsap_BTK SGP.homol First 112445 112488 -1.77 - 0 gene_3 # AA 1: 15
+Hsap_BTK SGP.homol First 117550 117552 -2.98 + 0 gene_4 # AA 1: 1
+Hsap_BTK SGP.homol Internal 117965 118070 22.92 + 0 gene_4 # AA 2: 37
+Hsap_BTK SGP.homol Internal 118261 118328 16.58 + 2 gene_4 # AA 37: 59
+Hsap_BTK SGP.homol Internal 121841 121963 15.59 + 0 gene_4 # AA 60:100
+Hsap_BTK SGP.homol Terminal 122234 122254 -4.89 + 0 gene_4 # AA 101:107
+Hsap_BTK SGP.homol Terminal 124315 124605 22.92 - 0 gene_5 # AA 334:430
+Hsap_BTK SGP.homol Internal 124876 125073 37.51 - 0 gene_5 # AA 268:333
+Hsap_BTK SGP.homol Internal 125291 125452 26.77 - 0 gene_5 # AA 214:267
+Hsap_BTK SGP.homol Internal 127172 127263 5.78 - 2 gene_5 # AA 183:213
+Hsap_BTK SGP.homol Internal 128138 128315 37.95 - 0 gene_5 # AA 124:183
+Hsap_BTK SGP.homol Internal 130317 130491 30.15 - 1 gene_5 # AA 65:123
+Hsap_BTK SGP.homol First 134216 134409 27.80 - 0 gene_5 # AA 1: 65
+Hsap_BTK SGP.homol Single 138495 139844 270.80 + 0 gene_6 # AA 1:450
+Hsap_BTK SGP.homol First 170637 170661 -0.90 + 0 gene_7 # AA 1: 9
+Hsap_BTK SGP.homol Internal 172504 172550 2.43 + 2 gene_7 # AA 9: 24
=====================================
debian/tests/test-data/Hsap_BTK_tblastx3X.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_tblastx3X.gff
@@ -0,0 +1,121 @@
+Hsap_BTK tblastx.3X SR 4532 4645 5.58 - .
+Hsap_BTK tblastx.3X SR 8142 8294 8.52 - .
+Hsap_BTK tblastx.3X SR 8214 8282 4.58 + .
+Hsap_BTK tblastx.3X SR 9953 10087 11.08 - .
+Hsap_BTK tblastx.3X SR 10088 10105 10.34 - .
+Hsap_BTK tblastx.3X SR 13735 13890 3.94 - .
+Hsap_BTK tblastx.3X SR 66372 66377 5.86 - .
+Hsap_BTK tblastx.3X SR 66378 66383 6.32 - .
+Hsap_BTK tblastx.3X SR 66384 66482 6.6 - .
+Hsap_BTK tblastx.3X SR 66385 66453 2.84 - .
+Hsap_BTK tblastx.3X SR 66410 66481 2.46 - .
+Hsap_BTK tblastx.3X SR 67096 67155 2.56 - .
+Hsap_BTK tblastx.3X SR 67099 67155 2.84 + .
+Hsap_BTK tblastx.3X SR 67156 67161 2.56 + .
+Hsap_BTK tblastx.3X SR 67156 67158 2.46 - .
+Hsap_BTK tblastx.3X SR 67158 67175 6.78 - .
+Hsap_BTK tblastx.3X SR 67161 67403 22.9 + .
+Hsap_BTK tblastx.3X SR 67166 67273 7.88 - .
+Hsap_BTK tblastx.3X SR 67176 67304 6.86 - .
+Hsap_BTK tblastx.3X SR 67305 67442 7.78 - .
+Hsap_BTK tblastx.3X SR 67404 67442 11.9 + .
+Hsap_BTK tblastx.3X SR 67443 67472 6.5 - .
+Hsap_BTK tblastx.3X SR 67443 67445 7.78 + .
+Hsap_BTK tblastx.3X SR 67446 67478 4.86 + .
+Hsap_BTK tblastx.3X SR 73003 73122 10.26 + .
+Hsap_BTK tblastx.3X SR 73008 73166 16.04 - .
+Hsap_BTK tblastx.3X SR 73123 73164 2.56 + .
+Hsap_BTK tblastx.3X SR 73167 73214 15.66 - .
+Hsap_BTK tblastx.3X SR 74541 74654 3.76 + .
+Hsap_BTK tblastx.3X SR 75027 75029 12.74 - .
+Hsap_BTK tblastx.3X SR 75030 75209 13.28 - .
+Hsap_BTK tblastx.3X SR 79676 79696 13 - .
+Hsap_BTK tblastx.3X SR 79697 79867 21.34 - .
+Hsap_BTK tblastx.3X SR 80371 80505 15.38 - .
+Hsap_BTK tblastx.3X SR 81111 81203 5.86 + .
+Hsap_BTK tblastx.3X SR 82549 82731 22.08 - .
+Hsap_BTK tblastx.3X SR 82718 82771 2.66 + .
+Hsap_BTK tblastx.3X SR 82732 82806 19.34 - .
+Hsap_BTK tblastx.3X SR 82909 82992 3.38 + .
+Hsap_BTK tblastx.3X SR 83265 83444 17.14 + .
+Hsap_BTK tblastx.3X SR 83289 83489 24.46 - .
+Hsap_BTK tblastx.3X SR 83974 84102 11.08 - .
+Hsap_BTK tblastx.3X SR 84772 84954 16.4 - .
+Hsap_BTK tblastx.3X SR 84955 84963 6.14 - .
+Hsap_BTK tblastx.3X SR 85793 85870 5.22 - .
+Hsap_BTK tblastx.3X SR 86593 86673 5.3 - .
+Hsap_BTK tblastx.3X SR 87056 87175 9.62 + .
+Hsap_BTK tblastx.3X SR 87073 87219 16.86 - .
+Hsap_BTK tblastx.3X SR 87154 87240 9.52 + .
+Hsap_BTK tblastx.3X SR 88634 88810 7.42 - .
+Hsap_BTK tblastx.3X SR 89044 89241 19.6 - .
+Hsap_BTK tblastx.3X SR 95379 95447 4.3 - .
+Hsap_BTK tblastx.3X SR 95420 95533 11 + .
+Hsap_BTK tblastx.3X SR 96481 96585 9.52 - .
+Hsap_BTK tblastx.3X SR 97470 97556 5.58 - .
+Hsap_BTK tblastx.3X SR 97504 97590 6.4 + .
+Hsap_BTK tblastx.3X SR 100925 101116 9.16 + .
+Hsap_BTK tblastx.3X SR 101036 101185 15.38 - .
+Hsap_BTK tblastx.3X SR 101620 101844 22.54 - .
+Hsap_BTK tblastx.3X SR 111218 111304 2.92 - .
+Hsap_BTK tblastx.3X SR 111895 111996 4.66 + .
+Hsap_BTK tblastx.3X SR 112398 112499 4.66 + .
+Hsap_BTK tblastx.3X SR 112672 112728 2.92 - .
+Hsap_BTK tblastx.3X SR 113223 113306 4.48 - .
+Hsap_BTK tblastx.3X SR 117964 118104 12.54 - .
+Hsap_BTK tblastx.3X SR 117965 118078 12.74 + .
+Hsap_BTK tblastx.3X SR 117968 118069 3.1 - .
+Hsap_BTK tblastx.3X SR 118248 118250 3.48 + .
+Hsap_BTK tblastx.3X SR 118251 118334 7.06 + .
+Hsap_BTK tblastx.3X SR 121838 121840 13.46 + .
+Hsap_BTK tblastx.3X SR 121841 121975 14.02 + .
+Hsap_BTK tblastx.3X SR 121869 121871 3.2 + .
+Hsap_BTK tblastx.3X SR 121872 121964 5.86 + .
+Hsap_BTK tblastx.3X SR 124351 124620 23.54 - .
+Hsap_BTK tblastx.3X SR 124891 124983 4.3 + .
+Hsap_BTK tblastx.3X SR 124963 125073 9.52 - .
+Hsap_BTK tblastx.3X SR 125285 125479 16.86 - .
+Hsap_BTK tblastx.3X SR 127151 127276 9.52 + .
+Hsap_BTK tblastx.3X SR 128181 128315 12.1 - .
+Hsap_BTK tblastx.3X SR 130308 130538 23.72 - .
+Hsap_BTK tblastx.3X SR 134209 134439 19.06 - .
+Hsap_BTK tblastx.3X SR 134745 134819 3.56 - .
+Hsap_BTK tblastx.3X SR 138440 138631 13.2 - .
+Hsap_BTK tblastx.3X SR 138462 138488 23 + .
+Hsap_BTK tblastx.3X SR 138489 138542 31.24 + .
+Hsap_BTK tblastx.3X SR 138543 138713 56.72 + .
+Hsap_BTK tblastx.3X SR 138714 138881 66.9 + .
+Hsap_BTK tblastx.3X SR 138882 139259 67.08 + .
+Hsap_BTK tblastx.3X SR 138891 138938 2.46 - .
+Hsap_BTK tblastx.3X SR 139260 139841 68.26 + .
+Hsap_BTK tblastx.3X SR 139291 139374 5.96 - .
+Hsap_BTK tblastx.3X SR 139614 139697 4.66 - .
+Hsap_BTK tblastx.3X SR 139645 139710 3.1 - .
+Hsap_BTK tblastx.3X SR 139771 139854 3.76 - .
+Hsap_BTK tblastx.3X SR 140159 140248 4.12 + .
+Hsap_BTK tblastx.3X SR 140278 140373 3.38 - .
+Hsap_BTK tblastx.3X SR 140370 140474 7.88 - .
+Hsap_BTK tblastx.3X SR 140517 140591 2.46 - .
+Hsap_BTK tblastx.3X SR 140522 140605 3.02 - .
+Hsap_BTK tblastx.3X SR 170055 170174 3.3 - .
+Hsap_BTK tblastx.3X SR 170195 170215 19.78 + .
+Hsap_BTK tblastx.3X SR 170216 170458 22.26 + .
+Hsap_BTK tblastx.3X SR 170216 170218 7.42 - .
+Hsap_BTK tblastx.3X SR 170217 170315 6.96 - .
+Hsap_BTK tblastx.3X SR 170217 170339 5.12 + .
+Hsap_BTK tblastx.3X SR 170219 170347 12.46 - .
+Hsap_BTK tblastx.3X SR 170302 170400 6.32 - .
+Hsap_BTK tblastx.3X SR 170316 170321 6.6 - .
+Hsap_BTK tblastx.3X SR 170325 170423 10.44 - .
+Hsap_BTK tblastx.3X SR 170351 170560 11.82 - .
+Hsap_BTK tblastx.3X SR 170352 170363 4.86 + .
+Hsap_BTK tblastx.3X SR 170364 170444 6.04 + .
+Hsap_BTK tblastx.3X SR 170401 170406 5.86 - .
+Hsap_BTK tblastx.3X SR 170407 170409 4.48 - .
+Hsap_BTK tblastx.3X SR 170448 170453 8.52 + .
+Hsap_BTK tblastx.3X SR 170454 170459 8.7 + .
+Hsap_BTK tblastx.3X SR 170459 170464 12.82 + .
+Hsap_BTK tblastx.3X SR 170460 170624 13.64 + .
+Hsap_BTK tblastx.3X SR 170466 170543 4.02 - .
+Hsap_BTK tblastx.3X SR 170542 170616 3.2 - .
+Hsap_BTK tblastx.3X SR 170625 170630 6.5 + .
=====================================
debian/tests/test-data/Hsap_BTK_tblastxFO.gff
=====================================
--- /dev/null
+++ b/debian/tests/test-data/Hsap_BTK_tblastxFO.gff
@@ -0,0 +1,123 @@
+Hsap_BTK tblastx.homol SR 72980 73069 5.3 + .
+Hsap_BTK tblastx.homol SR 72980 73060 4.58 - .
+Hsap_BTK tblastx.homol SR 73003 73203 23 + .
+Hsap_BTK tblastx.homol SR 73008 73214 22.72 - .
+Hsap_BTK tblastx.homol SR 74541 74654 3.76 + .
+Hsap_BTK tblastx.homol SR 75030 75209 13.28 - .
+Hsap_BTK tblastx.homol SR 75034 75087 3.56 + .
+Hsap_BTK tblastx.homol SR 76389 76463 2.84 + .
+Hsap_BTK tblastx.homol SR 76394 76462 3.56 - .
+Hsap_BTK tblastx.homol SR 79697 79867 21.34 - .
+Hsap_BTK tblastx.homol SR 79723 79800 4.48 + .
+Hsap_BTK tblastx.homol SR 79769 79849 3.02 + .
+Hsap_BTK tblastx.homol SR 80362 80463 7.06 + .
+Hsap_BTK tblastx.homol SR 80371 80505 16.12 - .
+Hsap_BTK tblastx.homol SR 80378 80512 13.92 + .
+Hsap_BTK tblastx.homol SR 81111 81203 5.86 + .
+Hsap_BTK tblastx.homol SR 81135 81200 3.76 - .
+Hsap_BTK tblastx.homol SR 82539 82625 2.92 + .
+Hsap_BTK tblastx.homol SR 82549 82806 31.88 - .
+Hsap_BTK tblastx.homol SR 82571 82636 3.56 + .
+Hsap_BTK tblastx.homol SR 82630 82788 8.34 + .
+Hsap_BTK tblastx.homol SR 82673 82819 12.46 + .
+Hsap_BTK tblastx.homol SR 82909 82992 3.38 + .
+Hsap_BTK tblastx.homol SR 83265 83456 19.24 + .
+Hsap_BTK tblastx.homol SR 83281 83481 16.76 + .
+Hsap_BTK tblastx.homol SR 83289 83489 24.46 - .
+Hsap_BTK tblastx.homol SR 83974 84102 11.08 - .
+Hsap_BTK tblastx.homol SR 84772 84954 16.76 - .
+Hsap_BTK tblastx.homol SR 84811 84954 11.54 + .
+Hsap_BTK tblastx.homol SR 85061 85264 9.62 - .
+Hsap_BTK tblastx.homol SR 85105 85203 8.24 + .
+Hsap_BTK tblastx.homol SR 85116 85229 8.06 + .
+Hsap_BTK tblastx.homol SR 85793 85870 5.22 - .
+Hsap_BTK tblastx.homol SR 86584 86673 3.1 + .
+Hsap_BTK tblastx.homol SR 86593 86673 5.3 - .
+Hsap_BTK tblastx.homol SR 87018 87161 5.58 - .
+Hsap_BTK tblastx.homol SR 87056 87175 9.9 + .
+Hsap_BTK tblastx.homol SR 87073 87219 16.86 - .
+Hsap_BTK tblastx.homol SR 87154 87240 9.52 + .
+Hsap_BTK tblastx.homol SR 88634 88810 7.42 - .
+Hsap_BTK tblastx.homol SR 89038 89223 15.76 + .
+Hsap_BTK tblastx.homol SR 89044 89241 19.6 - .
+Hsap_BTK tblastx.homol SR 95379 95483 6.68 - .
+Hsap_BTK tblastx.homol SR 95409 95498 4.4 + .
+Hsap_BTK tblastx.homol SR 95419 95508 6.04 - .
+Hsap_BTK tblastx.homol SR 95420 95533 11 + .
+Hsap_BTK tblastx.homol SR 95521 95613 3.66 + .
+Hsap_BTK tblastx.homol SR 95528 95608 5.5 - .
+Hsap_BTK tblastx.homol SR 95641 95721 3.02 + .
+Hsap_BTK tblastx.homol SR 96481 96585 9.52 - .
+Hsap_BTK tblastx.homol SR 97470 97556 5.58 - .
+Hsap_BTK tblastx.homol SR 97472 97564 5.4 - .
+Hsap_BTK tblastx.homol SR 97504 97590 6.4 + .
+Hsap_BTK tblastx.homol SR 98124 98231 2.74 - .
+Hsap_BTK tblastx.homol SR 98152 98226 4.48 + .
+Hsap_BTK tblastx.homol SR 100925 101116 9.16 + .
+Hsap_BTK tblastx.homol SR 101036 101185 15.38 - .
+Hsap_BTK tblastx.homol SR 101620 101844 22.54 - .
+Hsap_BTK tblastx.homol SR 101643 101714 3.2 + .
+Hsap_BTK tblastx.homol SR 101678 101824 13.38 + .
+Hsap_BTK tblastx.homol SR 101731 101838 6.04 + .
+Hsap_BTK tblastx.homol SR 105153 105323 3.66 + .
+Hsap_BTK tblastx.homol SR 110352 110414 3.02 + .
+Hsap_BTK tblastx.homol SR 111218 111304 2.92 - .
+Hsap_BTK tblastx.homol SR 111895 111996 4.86 + .
+Hsap_BTK tblastx.homol SR 112398 112499 4.66 + .
+Hsap_BTK tblastx.homol SR 112399 112524 5.4 - .
+Hsap_BTK tblastx.homol SR 112534 112782 24.28 - .
+Hsap_BTK tblastx.homol SR 112593 112751 16.48 + .
+Hsap_BTK tblastx.homol SR 113223 113306 4.48 - .
+Hsap_BTK tblastx.homol SR 113230 113328 3.02 - .
+Hsap_BTK tblastx.homol SR 113231 113305 3.02 + .
+Hsap_BTK tblastx.homol SR 117964 118104 12.54 - .
+Hsap_BTK tblastx.homol SR 117965 118078 12.74 + .
+Hsap_BTK tblastx.homol SR 118233 118334 5.12 - .
+Hsap_BTK tblastx.homol SR 118237 118329 3.1 + .
+Hsap_BTK tblastx.homol SR 118251 118334 7.06 + .
+Hsap_BTK tblastx.homol SR 121841 121975 14.02 + .
+Hsap_BTK tblastx.homol SR 121871 121942 2.84 - .
+Hsap_BTK tblastx.homol SR 124351 124620 23.54 - .
+Hsap_BTK tblastx.homol SR 124464 124547 3.1 + .
+Hsap_BTK tblastx.homol SR 124480 124563 3.02 + .
+Hsap_BTK tblastx.homol SR 124846 124992 8.6 + .
+Hsap_BTK tblastx.homol SR 124870 125073 20.8 - .
+Hsap_BTK tblastx.homol SR 124999 125070 2.92 + .
+Hsap_BTK tblastx.homol SR 125261 125455 16.12 + .
+Hsap_BTK tblastx.homol SR 125285 125479 16.86 - .
+Hsap_BTK tblastx.homol SR 125353 125460 6.04 + .
+Hsap_BTK tblastx.homol SR 127147 127275 6.4 + .
+Hsap_BTK tblastx.homol SR 127151 127276 9.52 + .
+Hsap_BTK tblastx.homol SR 127169 127312 8.88 - .
+Hsap_BTK tblastx.homol SR 128124 128315 20.8 - .
+Hsap_BTK tblastx.homol SR 128135 128326 17.22 + .
+Hsap_BTK tblastx.homol SR 130308 130538 24.18 - .
+Hsap_BTK tblastx.homol SR 134152 134346 8.52 + .
+Hsap_BTK tblastx.homol SR 134209 134439 19.06 - .
+Hsap_BTK tblastx.homol SR 134213 134377 6.22 + .
+Hsap_BTK tblastx.homol SR 134573 134689 3.48 + .
+Hsap_BTK tblastx.homol SR 134586 134684 3.66 - .
+Hsap_BTK tblastx.homol SR 134617 134748 11.64 + .
+Hsap_BTK tblastx.homol SR 134626 134700 4.86 - .
+Hsap_BTK tblastx.homol SR 134721 134819 7.6 - .
+Hsap_BTK tblastx.homol SR 134729 134854 3.56 + .
+Hsap_BTK tblastx.homol SR 134779 134892 2.74 - .
+Hsap_BTK tblastx.homol SR 134790 134879 3.76 + .
+Hsap_BTK tblastx.homol SR 134963 135067 5.22 + .
+Hsap_BTK tblastx.homol SR 134963 135067 5.22 - .
+Hsap_BTK tblastx.homol SR 138440 138631 14.38 - .
+Hsap_BTK tblastx.homol SR 138462 139841 176.68 + .
+Hsap_BTK tblastx.homol SR 138635 138877 27.76 - .
+Hsap_BTK tblastx.homol SR 138786 138887 5.12 - .
+Hsap_BTK tblastx.homol SR 138841 139044 22.9 - .
+Hsap_BTK tblastx.homol SR 138938 139075 15.66 - .
+Hsap_BTK tblastx.homol SR 139023 139283 7.7 - .
+Hsap_BTK tblastx.homol SR 139105 139284 6.04 - .
+Hsap_BTK tblastx.homol SR 139288 139428 14.2 - .
+Hsap_BTK tblastx.homol SR 139412 139480 4.2 - .
+Hsap_BTK tblastx.homol SR 139425 139574 14.02 - .
+Hsap_BTK tblastx.homol SR 139578 139694 9.8 - .
+Hsap_BTK tblastx.homol SR 139645 139710 3.1 - .
+Hsap_BTK tblastx.homol SR 139732 139866 7.42 - .
+Hsap_BTK tblastx.homol SR 140159 140248 4.12 + .
+Hsap_BTK tblastx.homol SR 140370 140462 7.78 - .
=====================================
debian/tests/test-data/brown.a3.rc
=====================================
--- /dev/null
+++ b/debian/tests/test-data/brown.a3.rc
@@ -0,0 +1,73 @@
+########################################
+## DEFAULT CUSTOM FILE FOR GFF2PS ##
+########################################
+#
+# $Id: brown.a3.rc,v 1.3 2001/08/31 17:42:12 jabril Exp $
+#
+# L ######PAGE LAYOUT & PROGRAM OPTIONS######
+#
+page_size=a3
+page_orientation=Landscape
+# page_number=1
+blocks_x_page=4
+nucleotides_x_line=30000
+zoom=*..*
+# major_tickmarks_num=10
+# minor_tickmarks_num=10
+major_tickmarks_nucleotides=1000
+minor_tickmarks_nucleotides=250
+#
+left_source_label_width=2.5cm
+show_blocks_top-bottom=off
+#
+group_label_scale=2
+#
+#
+# F ############GENOMIC FEATURES############
+#
+*::fill_shape_mode=1_color
+LINE/L2::feature_color=verydarkred
+SINE/Alu::feature_color=verydarkgreen
+SINE/MIR::feature_color=verydarkbrown
+LTR/ERV1::feature_color=verydarkblue
+Low_complexity::feature_color=verydarkyellow
+Simple_repeat::feature_color=verydarkorange
+#
+# G ############GROUP FEATURES##############
+#
+*::group_line=none
+*::group_shape=thick_line
+#
+# S ############SOURCE FEATURES#############
+#
+*::unfold_grouped_ungrouped=off
+*::unfold_ungrouped_line=off
+*::unfold_grouped_line=off
+*::range=none
+*::source_line_color=black
+*::source_line=long_dotted
+#
+annotation::feature_color=darkgreen
+annotation::group_color=verydarkgreen
+SGP.3X::feature_color=darkorange
+SGP.3X::group_color=verydarkorange
+SGP.homol::feature_color=darkorange
+SGP.homol::group_color=verydarkorange
+geneid_v1.0::feature_color=lightviolet
+geneid_v1.0::group_color=darkviolet
+genscan::feature_color=blue
+genscan::group_color=verydarkblue
+tblastx.3X::feature_color=red
+tblastx.3X::group_color=verydarkred
+tblastx.homol::feature_color=red
+tblastx.homol::group_color=verydarkred
+# RepeatMasker::feature_color=####
+#
+annotation::left_label=ANNOTATION
+SGP.3X::left_label=SGP 3X
+SGP.homol::left_label=SGP
+geneid_v1.0::left_label=GENEID
+genscan::left_label=GENSCAN
+tblastx.3X::left_label=TBLASTX 3X
+tblastx.homol::left_label=TBLASTX
+RepeatMasker::left_label=REPEATS
View it on GitLab: https://salsa.debian.org/med-team/gff2ps/commit/bdbe0bdedf134b23434445b8cea795897ae4f4e5
--
View it on GitLab: https://salsa.debian.org/med-team/gff2ps/commit/bdbe0bdedf134b23434445b8cea795897ae4f4e5
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