[med-svn] [Git][med-team/ltrsift][master] 5 commits: debhelper 11
Andreas Tille
gitlab at salsa.debian.org
Wed Jul 11 20:09:32 BST 2018
Andreas Tille pushed to branch master at Debian Med / ltrsift
Commits:
c40ef275 by Andreas Tille at 2018-07-11T20:48:12+02:00
debhelper 11
- - - - -
173f27fa by Andreas Tille at 2018-07-11T20:48:15+02:00
Point Vcs fields to salsa.debian.org
- - - - -
02759378 by Andreas Tille at 2018-07-11T20:55:11+02:00
Drop explicit debug package
- - - - -
251460f8 by Andreas Tille at 2018-07-11T20:58:03+02:00
Fix spelling
- - - - -
72b6e267 by Andreas Tille at 2018-07-11T20:59:34+02:00
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/compat
- debian/control
- debian/patches/series
- + debian/patches/spelling.patch
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,14 @@
+ltrsift (1.0.2-8) unstable; urgency=medium
+
+ * Team upload.
+ * debhelper 11
+ * Point Vcs fields to salsa.debian.org
+ * Standards-Version: 4.1.5
+ * Drop explicit debug package
+ * Fix spelling
+
+ -- Andreas Tille <tille at debian.org> Wed, 11 Jul 2018 20:58:11 +0200
+
ltrsift (1.0.2-7) unstable; urgency=medium
* Remove -m32/-m64 for building for i386 reproducibility.
=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -3,13 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
libgenometools0-dev,
libgtk2.0-dev,
libglib2.0-dev
-Standards-Version: 3.9.7
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ltrsift.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/ltrsift.git
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/ltrsift
+Vcs-Git: https://salsa.debian.org/med-team/ltrsift.git
Homepage: http://www.zbh.uni-hamburg.de/LTRsift
Package: ltrsift
@@ -29,26 +29,3 @@ Description: postprocessing and classification of LTR retrotransposons
structure in a hierarchical fashion, allowing the user to "sift" through the
sometimes large results of de novo prediction software. It also offers
customizable filtering and classification functionality.
-
-Package: ltrsift-dbg
-Architecture: any
-Section: debug
-Priority: extra
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ltrsift (= ${binary:Version})
-Description: postprocessing and classification of LTR retrotransposons, with debug symbols
- This package contains debug information stripped from LTRsift.
- You may decide to install it to help identifying issues, typically
- to help communication with upstream developers.
-
-Package: ltrsift-examples
-Architecture: all
-Depends: ${misc:Depends}
-Suggests: ltrsift
-Description: example data for LTRsift
- This package contains test sequences (gzipped FASTA) and annotations (GFF3)
- from the Drosophila melanogaster (fruit fly) genome, to be used in an example
- process of postprocessing and classification of newly detected LTR
- retrotransposons. Scripts for using LTRsift to encode the sequences into a
- format accepted by LTRsift are included as well.
=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
build_on_64bit
use_deterministic_file_order
+spelling.patch
=====================================
debian/patches/spelling.patch
=====================================
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,26 @@
+Description: Fix spelling
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 11 Jul 2018 20:48:12 +0200
+
+--- a/src/menubar.c
++++ b/src/menubar.c
+@@ -1218,7 +1218,7 @@ static void help_about_activate(GT_UNUSE
+ else if (err->domain == G_FILE_ERROR)
+ g_warning("GFileError: %s\n", err->message);
+ else
+- g_warning("An error in the domain: %d has occured!\n", err->domain);
++ g_warning("An error in the domain: %d has occurred!\n", err->domain);
+
+ g_error_free(err);
+ }
+--- a/src/message_strings.h
++++ b/src/message_strings.h
+@@ -147,7 +147,7 @@
+ "version = \"Script version here\"\n" \
+ "email = \"Your email here\"\n" \
+ "short_descr = \"Short description here\"\n" \
+- "description = \"Script desription here\"\n\n" \
++ "description = \"Script description here\"\n\n" \
+ "function filter(gn)\n"\
+ " return true -- return false\n" \
+ "end"
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -22,13 +22,13 @@ else
endif
%:
- dh $@ --parallel
+ dh $@
override_dh_auto_clean:
$(MAKE) cleanup
override_dh_auto_build:
- dh_auto_build --parallel -- x32=$(X32) 64bit=$(64BIT) errorcheck=no
+ dh_auto_build -- x32=$(X32) 64bit=$(64BIT) errorcheck=no
override_dh_auto_test:
#dh_auto_test -- useshared=yes x32=$(X32) 64bit=$(64BIT) testthreads=5
@@ -38,8 +38,5 @@ override_dh_auto_install:
gzip -n -9 sample_data/dmel-2L-chromosome-r5.8.fasta
dh_auto_install -- 64bit=$(64BIT) errorcheck=no prefix=$(DESTDIR)/usr
-override_dh_strip:
- dh_strip --dbg-package=ltrsift-dbg
-
override_dh_installdocs:
dh_installdocs --exclude=license.template
View it on GitLab: https://salsa.debian.org/med-team/ltrsift/compare/c05d8fdacd3b11d00169df726f84ac0c25954848...72b6e267b12a6729c865e64cbffaa4b60f670e49
--
View it on GitLab: https://salsa.debian.org/med-team/ltrsift/compare/c05d8fdacd3b11d00169df726f84ac0c25954848...72b6e267b12a6729c865e64cbffaa4b60f670e49
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