[med-svn] [Git][med-team/python-pybedtools][master] Add a patch to fix tests. Turn on testing

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / python-pybedtools


Commits:
b0752f36 by Liubov Chuprikova at 2018-07-13T11:44:07+03:00
Add a patch to fix tests. Turn on testing

- - - - -


3 changed files:

- + debian/patches/define_filenotfounderror_python2.patch
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/patches/define_filenotfounderror_python2.patch
=====================================
--- /dev/null
+++ b/debian/patches/define_filenotfounderror_python2.patch
@@ -0,0 +1,36 @@
+Author: Liubov Chuprikova <chuprikovalv at gmail.com>
+Last-Update: Wed, 13 July 2018 11:36:44 +0300
+Description: Define FileNotFoundError as OSError for python 2
+
+
+--- a/pybedtools/test/test1.py
++++ b/pybedtools/test/test1.py
+@@ -20,6 +20,12 @@
+ import warnings
+ 
+ 
++try:
++    FileNotFoundError
++except NameError:
++    # python2
++    FileNotFoundError = OSError
++
+ 
+ def fix(x):
+     """
+--- a/pybedtools/contrib/bigwig.py
++++ b/pybedtools/contrib/bigwig.py
+@@ -6,6 +6,13 @@
+ import subprocess
+ 
+ 
++try:
++    FileNotFoundError
++except NameError:
++    # python2
++    FileNotFoundError = OSError
++
++
+ def mapped_read_count(bam, force=False):
+     """
+     Scale is cached in a bam.scale file containing the number of mapped reads.


=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -4,3 +4,4 @@ disable-write-version
 disable-test-156
 rename-scripts
 c8dff864dbc942bb7adb3e719b0702f7e3989d36.patch
+define_filenotfounderror_python2.patch


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -27,5 +27,3 @@ override_dh_auto_install:
 	rm -fr debian/python-pybedtools/usr/bin
 	rm -fr debian/python3-pybedtools/usr/bin
 
-override_dh_auto_test:
-	echo "Not testing."



View it on GitLab: https://salsa.debian.org/med-team/python-pybedtools/commit/b0752f36626fc7589f40f9b6960e722e3965c2d4

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pybedtools/commit/b0752f36626fc7589f40f9b6960e722e3965c2d4
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