[med-svn] [Git][med-team/pbh5tools][master] 7 commits: d/watch: use git mode
Andreas Tille
gitlab at salsa.debian.org
Fri Jul 13 15:15:31 BST 2018
Andreas Tille pushed to branch master at Debian Med / pbh5tools
Commits:
6c273eb2 by Andreas Tille at 2018-07-13T16:02:43+02:00
d/watch: use git mode
- - - - -
64cb3778 by Andreas Tille at 2018-07-13T16:02:43+02:00
New upstream version 0.8.0+git20170929.58d54ff+dfsg
- - - - -
b5389949 by Andreas Tille at 2018-07-13T16:02:43+02:00
debhelper 11
- - - - -
061deb56 by Andreas Tille at 2018-07-13T16:02:43+02:00
Point Vcs fields to salsa.debian.org
- - - - -
6a7d29d8 by Andreas Tille at 2018-07-13T16:02:43+02:00
Standards-Version: 4.1.5
- - - - -
fa682d15 by Andreas Tille at 2018-07-13T16:02:43+02:00
Build-Depends: python-h5py
- - - - -
f72e771d by Andreas Tille at 2018-07-13T16:06:54+02:00
DEP3 fixes, Upload to unstable
- - - - -
7 changed files:
- README.md
- debian/changelog
- debian/compat
- debian/control
- debian/patches/multiarch-module-path.patch
- debian/patches/series
- debian/watch
Changes:
=====================================
README.md
=====================================
--- a/README.md
+++ b/README.md
@@ -4,3 +4,7 @@ Biosciences. Specifically, this package provides functionality for
manipulating and extracting data from "cmp.h5" and "bas.h5" files.
[Detailed documentation here](doc/index.rst).
+
+DISCLAIMER
+----------
+THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,15 @@
+pbh5tools (0.8.0+git20170929.58d54ff+dfsg-1) unstable; urgency=medium
+
+ * Team upload.
+ * d/watch: use git mode
+ * debhelper 11
+ * Point Vcs fields to salsa.debian.org
+ * Standards-Version: 4.1.5
+ * Build-Depends: python-h5py
+ * DEP3
+
+ -- Andreas Tille <tille at debian.org> Fri, 13 Jul 2018 15:58:44 +0200
+
pbh5tools (0.8.0+dfsg-5) unstable; urgency=medium
* Rename source package to match primary binary package
=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -1,28 +1,28 @@
Source: pbh5tools
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif at debian.org>
-Build-Depends: debhelper (>= 9),
- dh-python,
- python,
- python-setuptools,
- python-pbcore,
- python-sphinx,
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~),
+ dh-python,
+ python,
+ python-setuptools,
+ python-pbcore,
+ python-sphinx,
python-nose,
- python-cram,
-Standards-Version: 3.9.7
+ python-h5py,
+ python-cram
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/pbh5tools
+Vcs-Git: https://salsa.debian.org/med-team/pbh5tools.git
Homepage: https://github.com/PacificBiosciences/pbh5tools
-Vcs-Git: https://anonscm.debian.org/git/debian-med/pbh5tools.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbh5tools.git
Package: pbh5tools
Architecture: all
-Depends:
- ${misc:Depends},
- ${python:Depends},
- python-pbh5tools (>= ${binary:Version}),
- python-pkg-resources,
+Depends: ${misc:Depends},
+ ${python:Depends},
+ python-pbh5tools (>= ${binary:Version}),
+ python-pkg-resources
Description: tools for manipulating Pacific Biosciences HDF5 files
This package provides functionality for manipulating and extracting data
from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers.
@@ -32,11 +32,11 @@ Description: tools for manipulating Pacific Biosciences HDF5 files
This package is part of the SMRTAnalysis suite.
Package: python-pbh5tools
-Section: python
Architecture: any
+Section: python
Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${python:Depends},
+ ${misc:Depends},
+ ${python:Depends}
Description: tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
This package provides functionality for manipulating and extracting data
from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers.
@@ -47,11 +47,11 @@ Description: tools for manipulating Pacific Biosciences HDF5 files -- Python 2 l
Python 2 backend library
Package: python-pbh5tools-doc
-Section: doc
Architecture: all
+Section: doc
Depends: ${misc:Depends},
- libjs-jquery,
- libjs-underscore
+ libjs-jquery,
+ libjs-underscore
Description: tools for manipulating HDF5 files produced by Pacific Biosciences (doc)
This package provides functionality for manipulating and extracting data
from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers.
=====================================
debian/patches/multiarch-module-path.patch
=====================================
--- a/debian/patches/multiarch-module-path.patch
+++ b/debian/patches/multiarch-module-path.patch
@@ -1,3 +1,7 @@
+Author: Afif Elghraoui
+Last-Update: 2016-03-20 00:45:22 -0700
+Description: Enable multiarch modules
+
--- python-pbh5tools.orig/pbh5tools/Indexer.py
+++ python-pbh5tools/pbh5tools/Indexer.py
@@ -32,10 +32,11 @@
=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -5,3 +5,4 @@ override-test-failure.patch
ignore-cram-results.patch
fix-type-in-test.patch
multiarch-module-path.patch
+# enable-nosetests
=====================================
debian/watch
=====================================
--- a/debian/watch
+++ b/debian/watch
@@ -1,2 +1,5 @@
-# Upstream currently does not tag versions in their github repository
-version=3
+version=4
+
+# Upstream is not tagging releases regularly - thus we use mode=git
+opts="mode=git,pretty=0.8.0+git%cd.%h,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
+ https://github.com/PacificBiosciences/pbh5tools.git HEAD
View it on GitLab: https://salsa.debian.org/med-team/pbh5tools/compare/ef127d989ed644755ae7f689327c182370c8a326...f72e771d24c21c2ec2f6d9dc284b94b76c927e04
--
View it on GitLab: https://salsa.debian.org/med-team/pbh5tools/compare/ef127d989ed644755ae7f689327c182370c8a326...f72e771d24c21c2ec2f6d9dc284b94b76c927e04
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