[med-svn] [Git][med-team/infernal][master] Thanks again to Yavor Doganov <yavor at gnu.org> for another very helpful hint

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / infernal


Commits:
3fce8ef5 by Andreas Tille at 2018-07-16T11:59:33+02:00
Thanks again to Yavor Doganov <yavor at gnu.org> for another very helpful hint

- - - - -


1 changed file:

- debian/patches/autoreconf.patch


Changes:

=====================================
debian/patches/autoreconf.patch
=====================================
--- a/debian/patches/autoreconf.patch
+++ b/debian/patches/autoreconf.patch
@@ -139,3 +139,33 @@ Description: Fix configure.ac to enable autoreconf
  fi
  
  # 5. Checks for libraries
+@@ -731,6 +731,29 @@ AC_CONFIG_FILES([easel/testsuite/Makefil
+ AC_CONFIG_FILES([easel/Makefile])
+ AC_CONFIG_FILES([easel/documentation/Makefile])
+ 
++
++AH_TOP([
++/* RAMLIMIT (in MB) defines how much memory we're
++ * allowed to expend on alignment algorithms without
++ * switching to more efficient memory forms - e.g.
++ * in smallcyk.c
++ */
++#ifndef RAMLIMIT
++#define RAMLIMIT 0
++#endif
++
++/* SRE_CONLEVEL will prob move to squid somewhere.
++ *  Set to 1 to activate contract checking, during debugging.
++ */
++#define SRE_CONLEVEL 1
++#if (SRE_CONLEVEL >= 1)
++#include <assert.h>
++#endif
++
++#define CMSEQDBENV       "BLASTDB"
++#define CMDBENV          "RFAMDB"
++])
++
+ ################################################################
+ # 13. AC_OUTPUT
+ ################################################################



View it on GitLab: https://salsa.debian.org/med-team/infernal/commit/3fce8ef53b60465a9b9b2ee6e1266d2ba1fe548d

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View it on GitLab: https://salsa.debian.org/med-team/infernal/commit/3fce8ef53b60465a9b9b2ee6e1266d2ba1fe548d
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