[med-svn] [Git][med-team/unicycler][master] 2 commits: Fix some installation issues

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / unicycler


Commits:
b47226ad by Andreas Tille at 2018-07-17T14:21:47+02:00
Fix some installation issues

- - - - -
bbc12f16 by Andreas Tille at 2018-07-17T14:22:37+02:00
Allow pilon-non-free as alternative

- - - - -


2 changed files:

- debian/control
- debian/rules


Changes:

=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -11,7 +11,7 @@ Build-Depends: debhelper (>= 11~),
                bowtie2,
                freebayes,
                ncbi-blast+,
-               pilon,
+               pilon | pilon-non-free,
                racon,
                samtools,
                spades,


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -17,11 +17,14 @@ override_dh_auto_clean:
 	find . -name "*.o" -delete
 	find . -name "*.so" -delete
 	find . -name __pycache__ -type d | xargs rm -rf
+	rm -rf .pybuild unicycler.egg-info
 
 override_dh_auto_build:
 	dh_auto_build
 	# building the dynamic library requires extra make call
 	make
+	# for some reason it also needs to be manually moved
+	cp -a unicycler/cpp_functions.so `dirname $$(find .pybuild -name cpp_wrappers.py)`
 
 override_dh_auto_test:
 	BUILDPATH=$(shell pybuild --print build_dir --interpreter python3) ; \
@@ -29,3 +32,8 @@ override_dh_auto_test:
 	ln -s $(CURDIR)/unicycler-runner.py $${BUILDPATH} ; \
 	cp -a unicycler/*.so $${BUILDPATH}/$(PYBUILD_NAME) ; \
 	PYTHONPATH=$${BUILDPATH}/$(PYBUILD_NAME) dh_auto_test || true
+
+override_dh_link:
+	dh_link
+	# symlink versioned shared lib to make it found
+	ln -s `basename $$(find debian -name "cpp_functions*.so")` `dirname $$(find debian -name "cpp_functions*.so")`/cpp_functions.so



View it on GitLab: https://salsa.debian.org/med-team/unicycler/compare/0e522bb899e93d02ca18c753d5cdfcd0134a00f3...bbc12f16fa57fb43a8eb809517cfb36ba4e041b9

-- 
View it on GitLab: https://salsa.debian.org/med-team/unicycler/compare/0e522bb899e93d02ca18c753d5cdfcd0134a00f3...bbc12f16fa57fb43a8eb809517cfb36ba4e041b9
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180717/76c81bcd/attachment-0001.html>