[med-svn] [Git][med-team/pscan-tfbs][master] 5 commits: Remove unused template files

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pscan-tfbs


Commits:
6fccae72 by Andreas Tille at 2018-06-08T14:49:46+02:00
Remove unused template files

- - - - -
ba2a898f by Andreas Tille at 2018-06-08T14:49:46+02:00
provide /usr/bin/pscan-tfbs to avoid file name conflict with pscan package and keep the original upstream name in /usr/lib/debian-med/bin/pscan

- - - - -
e46d2547 by Andreas Tille at 2018-06-08T14:49:46+02:00
Explain name change in README.Debian

- - - - -
59f809f6 by Andreas Tille at 2018-06-08T14:49:46+02:00
Standards-Version: 4.1.4

- - - - -
091bc024 by Andreas Tille at 2018-06-08T14:49:46+02:00
Upload to unstable

- - - - -


10 changed files:

- debian/README.Debian
- debian/changelog
- debian/control
- debian/manpages
- debian/pscan.1 → debian/pscan-tfbs.1
- debian/pscan-tfbs.install
- + debian/pscan-tfbs.links
- − debian/pscan.dirs
- − debian/pscan.doc-base
- − debian/pscan.install


Changes:

=====================================
debian/README.Debian
=====================================
--- a/debian/README.Debian
+++ b/debian/README.Debian
@@ -1,9 +1,40 @@
 pscan-tfbs for Debian
 ---------------------
 
-Please note that on Debian systems we can not use the name pscan because
-there is another package with the very same name.  So the package is
-renamed to pscan-tfbs.
+Name conflict with pscan package
+================================
+
+We are facing a name clash in the Free Software universe and we have to
+circumvent this somehow.  In this package it is done was follows:
+
+  1. The pscan executable
+        /usr/lib/debian-med/bin/pscan
+
+  2. The executable in the default PATH is
+        /usr/bin/pscan-tfbs
+     (which is a symlink to the above executale)
+
+
+If you want to use pscan right from the command line just set the
+PATH variable like
+
+  export PATH=/usr/lib/debian-med/bin:$PATH
+
+If a user creates a file
+
+    ${HOME}/.blends
+
+with the content
+
+# Add Blend names here which should prepend its bin dir to PATH
+debian-med
+
+the med-config package automatically adds this PATH to the users
+environment (when using bash).
+
+
+JASPAR database
+===============
 
 Pscan depends on a transcription factor binding site description. The 
 database "JASPAR" can be downloaded with the Debian 'getData' interface.


=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,15 @@
+pscan-tfbs (1.2.2-2) unstable; urgency=medium
+
+  * Team upload.
+  * Remove unused template files
+  * provide /usr/bin/pscan-tfbs to avoid file name conflict with pscan
+    package and keep the original upstream name in
+    /usr/lib/debian-med/bin/pscan
+    Closes: #901039
+  * Standards-Version: 4.1.4
+
+ -- Andreas Tille <tille at debian.org>  Fri, 08 Jun 2018 14:48:00 +0200
+
 pscan-tfbs (1.2.2-1) unstable; urgency=low
 
   [ Steffen Moeller ]


=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Section: science
 Priority: optional
 Build-Depends: debhelper (>= 10),
                libgsl-dev
-Standards-Version: 4.1.3
+Standards-Version: 4.1.4
 Vcs-Browser: https://salsa.debian.org/med-team/pscan-tfbs
 Vcs-Git: https://salsa.debian.org/med-team/pscan-tfbs.git
 Homepage: http://www.beaconlab.it/pscan


=====================================
debian/manpages
=====================================
--- a/debian/manpages
+++ b/debian/manpages
@@ -1 +1 @@
-debian/pscan.1
+debian/*.1


=====================================
debian/pscan.1 → debian/pscan-tfbs.1
=====================================


=====================================
debian/pscan-tfbs.install
=====================================
--- a/debian/pscan-tfbs.install
+++ b/debian/pscan-tfbs.install
@@ -1 +1 @@
-pscan	usr/bin
+pscan	usr/lib/debian-med/bin/


=====================================
debian/pscan-tfbs.links
=====================================
--- /dev/null
+++ b/debian/pscan-tfbs.links
@@ -0,0 +1,3 @@
+usr/lib/debian-med/bin/pscan		usr/bin/pscan-tfbs
+# Also link the manpage to the Debian Med name space
+usr/share/man/man1/pscan-tfbs.1.gz	usr/lib/debian-med/share/man/man1/pscan.1.gz


=====================================
debian/pscan.dirs deleted
=====================================
--- a/debian/pscan.dirs
+++ /dev/null
@@ -1 +0,0 @@
-usr/bin


=====================================
debian/pscan.doc-base deleted
=====================================
--- a/debian/pscan.doc-base
+++ /dev/null
@@ -1,10 +0,0 @@
-Document: pscan
-Title: Debian pscan Manual
-Author: G.Pesole,
- G.Pavesi <giulio.pavesi at unimi.it>,
- F.Zambelli <federico.zambelli at unimi.it>
-Abstract: The document resembles a UNIX man page.
-Section: science
-
-Format: text
-Files: /usr/share/doc/pscan/HELP.txt.gz


=====================================
debian/pscan.install deleted
=====================================
--- a/debian/pscan.install
+++ /dev/null
@@ -1 +0,0 @@
-pscan /usr/bin



View it on GitLab: https://salsa.debian.org/med-team/pscan-tfbs/compare/f831163100447f738e1bec4edefbcdec33daa1b0...091bc024fd0f50121e2cf9f8cb3bb9e45896f276

-- 
View it on GitLab: https://salsa.debian.org/med-team/pscan-tfbs/compare/f831163100447f738e1bec4edefbcdec33daa1b0...091bc024fd0f50121e2cf9f8cb3bb9e45896f276
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