[med-svn] [Git][med-team/soapdenovo][master] Fix "spelling-error-in-manpage"

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / soapdenovo


Commits:
de710ff1 by Liubov Chuprikova at 2018-06-09T11:05:55+02:00
Fix "spelling-error-in-manpage"

- - - - -


4 changed files:

- debian/changelog
- debian/soapdenovo-127mer.1
- debian/soapdenovo-31mer.1
- debian/soapdenovo-63mer.1


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -10,6 +10,7 @@ soapdenovo (1.05-5) UNRELEASED; urgency=medium
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.1.4
   * debhelper 11
+  * fix "spelling-error-in-manpage"
 
  -- Steffen Moeller <moeller at debian.org>  Wed, 06 Sep 2017 23:50:52 +0200
 


=====================================
debian/soapdenovo-127mer.1
=====================================
--- a/debian/soapdenovo-127mer.1
+++ b/debian/soapdenovo-127mer.1
@@ -57,7 +57,7 @@ pair_num_cutoff
 This parameter is the cutoff value of pair number for a reliable connection between two contigs or pre-scaffolds.
 .TP
 map_len
-This takes effect in the “map” step and is the minimun alignment length between a read and a contig required for a reliable read location.
+This takes effect in the “map” step and is the minimum alignment length between a read and a contig required for a reliable read location.
 .P
 The assembler accepts read file in two formats: FASTA or FASTQ.
 Mate-pair relationship could be indicated in two ways: two sequence files with reads in the same order belonging to a pair, or two adjacent reads in a single file (FASTA only) belonging to a pair. 
@@ -121,7 +121,7 @@ strength of merging similar sequences during contiging [default 1, min 0, max 3]
 intra-scaffold gap closure [default no]
 .TP
 \-u
-un-mask high coverage contigs before scaffolding [defaut mask]
+un-mask high coverage contigs before scaffolding [default mask]
 .TP
 \-G
 INT
@@ -276,7 +276,7 @@ f=/path/**LIBNAMEB**/fasta_read_single.fa
 .IP "Information for each clone library: insert-size, read index upper bound, rank and pair number cutoff for a reliable link."
 .IP "This file can be revised manually for scaffolding tuning."
 .IP "b. *.readOnContig"
-.IP "Read locations on contigs. Here contigs are referred by their edge index. Howerver about half of them are not listed in the *.contig file for their reverse-complementary counterparts are included already."
+.IP "Read locations on contigs. Here contigs are referred by their edge index. However about half of them are not listed in the *.contig file for their reverse-complementary counterparts are included already."
 .IP "c. *.readInGap"
 .IP "This file includes reads that could be located in gaps between contigs. This information will be used to close gaps in scaffolds."
 


=====================================
debian/soapdenovo-31mer.1
=====================================
--- a/debian/soapdenovo-31mer.1
+++ b/debian/soapdenovo-31mer.1
@@ -57,7 +57,7 @@ pair_num_cutoff
 This parameter is the cutoff value of pair number for a reliable connection between two contigs or pre-scaffolds.
 .TP
 map_len
-This takes effect in the “map” step and is the minimun alignment length between a read and a contig required for a reliable read location.
+This takes effect in the “map” step and is the minimum alignment length between a read and a contig required for a reliable read location.
 .P
 The assembler accepts read file in two formats: FASTA or FASTQ.
 Mate-pair relationship could be indicated in two ways: two sequence files with reads in the same order belonging to a pair, or two adjacent reads in a single file (FASTA only) belonging to a pair. 
@@ -121,7 +121,7 @@ strength of merging similar sequences during contiging [default 1, min 0, max 3]
 intra-scaffold gap closure [default no]
 .TP
 \-u
-un-mask high coverage contigs before scaffolding [defaut mask]
+un-mask high coverage contigs before scaffolding [default mask]
 .TP
 \-G
 INT
@@ -276,7 +276,7 @@ f=/path/**LIBNAMEB**/fasta_read_single.fa
 .IP "Information for each clone library: insert-size, read index upper bound, rank and pair number cutoff for a reliable link."
 .IP "This file can be revised manually for scaffolding tuning."
 .IP "b. *.readOnContig"
-.IP "Read locations on contigs. Here contigs are referred by their edge index. Howerver about half of them are not listed in the *.contig file for their reverse-complementary counterparts are included already."
+.IP "Read locations on contigs. Here contigs are referred by their edge index. However about half of them are not listed in the *.contig file for their reverse-complementary counterparts are included already."
 .IP "c. *.readInGap"
 .IP "This file includes reads that could be located in gaps between contigs. This information will be used to close gaps in scaffolds."
 


=====================================
debian/soapdenovo-63mer.1
=====================================
--- a/debian/soapdenovo-63mer.1
+++ b/debian/soapdenovo-63mer.1
@@ -57,7 +57,7 @@ pair_num_cutoff
 This parameter is the cutoff value of pair number for a reliable connection between two contigs or pre-scaffolds.
 .TP
 map_len
-This takes effect in the “map” step and is the minimun alignment length between a read and a contig required for a reliable read location.
+This takes effect in the “map” step and is the minimum alignment length between a read and a contig required for a reliable read location.
 .P
 The assembler accepts read file in two formats: FASTA or FASTQ.
 Mate-pair relationship could be indicated in two ways: two sequence files with reads in the same order belonging to a pair, or two adjacent reads in a single file (FASTA only) belonging to a pair. 
@@ -121,7 +121,7 @@ strength of merging similar sequences during contiging [default 1, min 0, max 3]
 intra-scaffold gap closure [default no]
 .TP
 \-u
-un-mask high coverage contigs before scaffolding [defaut mask]
+un-mask high coverage contigs before scaffolding [default mask]
 .TP
 \-G
 INT
@@ -276,7 +276,7 @@ f=/path/**LIBNAMEB**/fasta_read_single.fa
 .IP "Information for each clone library: insert-size, read index upper bound, rank and pair number cutoff for a reliable link."
 .IP "This file can be revised manually for scaffolding tuning."
 .IP "b. *.readOnContig"
-.IP "Read locations on contigs. Here contigs are referred by their edge index. Howerver about half of them are not listed in the *.contig file for their reverse-complementary counterparts are included already."
+.IP "Read locations on contigs. Here contigs are referred by their edge index. However about half of them are not listed in the *.contig file for their reverse-complementary counterparts are included already."
 .IP "c. *.readInGap"
 .IP "This file includes reads that could be located in gaps between contigs. This information will be used to close gaps in scaffolds."
 



View it on GitLab: https://salsa.debian.org/med-team/soapdenovo/commit/de710ff19760af81a8f03a7f46637a224c4b9d8a

-- 
View it on GitLab: https://salsa.debian.org/med-team/soapdenovo/commit/de710ff19760af81a8f03a7f46637a224c4b9d8a
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