[med-svn] [Git][med-team/rampler][master] Initial packaging

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / rampler


Commits:
4ff5a14a by Andreas Tille at 2018-06-09T16:09:53+02:00
Initial packaging

- - - - -


9 changed files:

- + debian/changelog
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/patches/series
- + debian/patches/use_debian_packaged_libs.patch
- + debian/rules
- + debian/source/format
- + debian/watch


Changes:

=====================================
debian/changelog
=====================================
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+rampler (1.1.0-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #????)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 08 Jun 2018 13:20:51 +0200


=====================================
debian/compat
=====================================
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+11


=====================================
debian/control
=====================================
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: rampler
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~),
+               cmake,
+               libbioparser-dev
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/rampler
+Vcs-Git: https://salsa.debian.org/med-team/rampler.git
+Homepage: https://github.com/rvaser/rampler
+
+Package: rampler
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: module for sampling genomic sequences
+ module for sampling genomic sequences
+ .
+ Asked for better description in
+   https://github.com/rvaser/rampler/issues/1
+ .
+ For the moment it is just a precondition for racon (#890187).
\ No newline at end of file


=====================================
debian/copyright
=====================================
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,31 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Spoa
+Upstream-Contact: 
+Source: https://github.com/rvaser/spoa/releases
+
+Files: *
+Copyright: 2016-2018 Robert Vaser
+License: MIT
+
+Files: debian/*
+Copyright: 2018 Andreas Tille <tille at debian.org>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.


=====================================
debian/patches/series
=====================================
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+use_debian_packaged_libs.patch


=====================================
debian/patches/use_debian_packaged_libs.patch
=====================================
--- /dev/null
+++ b/debian/patches/use_debian_packaged_libs.patch
@@ -0,0 +1,18 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update:  Fri, 08 Jun 2018 13:20:51 +0200
+Description: Use Debian packaged libraries
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -14,10 +14,6 @@ add_executable(rampler
+     src/sequence.cpp
+     src/sampler.cpp)
+ 
+-if (NOT TARGET bioparser)
+-    add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL)
+-endif()
+-
+-target_link_libraries(rampler bioparser)
++target_link_libraries(rampler z)
+ 
+ install(TARGETS rampler DESTINATION bin)


=====================================
debian/rules
=====================================
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+DEB_CMAKE_EXTRA_FLAGS = -DCMAKE_BUILD_TYPE=Release
+
+%:
+	dh $@
+
+override_dh_auto_configure:
+	dh_auto_configure -- $(DEB_CMAKE_EXTRA_FLAGS)


=====================================
debian/source/format
=====================================
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)


=====================================
debian/watch
=====================================
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=4
+
+https://github.com/rvaser/rampler/releases .*/archive/@ANY_VERSION@@ARCHIVE_EXT@



View it on GitLab: https://salsa.debian.org/med-team/rampler/commit/4ff5a14a5b488c7a15fd0e2129e7e32dff589e77

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