[med-svn] [Git][med-team/libedlib][master] 3 commits: Add manpage

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / libedlib


Commits:
085baad4 by Andreas Tille at 2018-06-10T00:19:27+02:00
Add manpage

- - - - -
2447c9f0 by Andreas Tille at 2018-06-10T00:21:28+02:00
Add symbols file

- - - - -
896739b7 by Andreas Tille at 2018-06-10T00:26:29+02:00
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- + debian/createmanpages
- + debian/edlib-aligner.1
- + debian/edlib-aligner.manpages
- + debian/libedlib0.symbols


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,5 +1,5 @@
-libedlib (1.2.3-1) UNRELEASED; urgency=medium
+libedlib (1.2.3-1) unstable; urgency=medium
 
   * Initial release (Closes: #901184)
 
- -- Andreas Tille <tille at debian.org>  Fri, 08 Jun 2018 13:20:51 +0200
+ -- Andreas Tille <tille at debian.org>  Sun, 10 Jun 2018 00:21:35 +0200


=====================================
debian/createmanpages
=====================================
--- /dev/null
+++ b/debian/createmanpages
@@ -0,0 +1,22 @@
+#!/bin/sh
+MANDIR=debian
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
+
+AUTHOR=".SH AUTHOR\nThis manpage was written by $DEBFULLNAME for the Debian distribution and
+can be used for any other usage of the program.
+"
+
+progname=edlib-aligner
+help2man --no-info --no-discard-stderr --help-option=" " \
+         --name='edlib sequence alignment tool using edit distance' \
+            --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+cat <<EOT
+Please enhance the help2man output.
+The following web page might be helpful in doing so:
+    http://liw.fi/manpages/
+EOT
+


=====================================
debian/edlib-aligner.1
=====================================
--- /dev/null
+++ b/debian/edlib-aligner.1
@@ -0,0 +1,31 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
+.TH EDLIB-ALIGNER "1" "June 2018" "edlib-aligner 1.2.3" "User Commands"
+.SH NAME
+edlib-aligner \- edlib sequence alignment tool using edit distance
+.SH SYNOPSIS
+.B edlib-aligner
+[\fI\,options\/\fR...] \fI\,<queries.fasta> <target.fasta>\/\fR
+.SH OPTIONS
+.TP
+\fB\-s\fR
+If specified, there will be no score or alignment output (silent mode).
+.TP
+\fB\-m\fR HW|NW|SHW
+Alignment mode that will be used. [default: NW]
+.TP
+\fB\-n\fR N
+Score will be calculated only for N best sequences (best = with smallest score). If N = 0 then all sequences will be calculated. Specifying small N can make total calculation much faster. [default: 0]
+.TP
+\fB\-k\fR K
+Sequences with score > K will be discarded. Smaller k, faster calculation. If \fB\-1\fR, no sequences will be discarded. [default: \fB\-1]\fR
+.TP
+\fB\-p\fR
+If specified, alignment path will be found and printed. This may significantly slow down the calculation.
+.TP
+\fB\-l\fR
+If specified, start locations will be found and printed. Each start location corresponds to one end location. This may somewhat slow down the calculation, but is still faster then finding alignment path and does not consume any extra memory.
+.TP
+\fB\-f\fR NICE|CIG_STD|CIG_EXT
+Format that will be used to print alignment path, can be used only with \fB\-p\fR. NICE will give visually attractive format, CIG_STD will  give standard cigar format and CIG_EXT will give extended cigar format. [default: NICE]
+.SH AUTHOR
+This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.


=====================================
debian/edlib-aligner.manpages
=====================================
--- /dev/null
+++ b/debian/edlib-aligner.manpages
@@ -0,0 +1 @@
+debian/*.1


=====================================
debian/libedlib0.symbols
=====================================
--- /dev/null
+++ b/debian/libedlib0.symbols
@@ -0,0 +1,10 @@
+libedlib.so.0 libedlib0 #MINVER#
+ _ZN18EqualityDefinitionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi at Base 1.2.3
+ _ZN18EqualityDefinitionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi at Base 1.2.3
+ _ZNSt6vectorIcSaIcEE12emplace_backIJcEEEvDpOT_ at Base 1.2.3
+ _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_ at Base 1.2.3
+ edlibAlign at Base 1.2.3
+ edlibAlignmentToCigar at Base 1.2.3
+ edlibDefaultAlignConfig at Base 1.2.3
+ edlibFreeAlignResult at Base 1.2.3
+ edlibNewAlignConfig at Base 1.2.3



View it on GitLab: https://salsa.debian.org/med-team/libedlib/compare/8548d4e08bb996c9759c863096f60843b41b4fbf...896739b72a00d0b2a2641644755d654c2dd6fe46

-- 
View it on GitLab: https://salsa.debian.org/med-team/libedlib/compare/8548d4e08bb996c9759c863096f60843b41b4fbf...896739b72a00d0b2a2641644755d654c2dd6fe46
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