[med-svn] [Git][med-team/kmerresistance][master] Initial packaging

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / kmerresistance


Commits:
958d2967 by Andreas Tille at 2018-06-12T08:51:42+02:00
Initial packaging

- - - - -


10 changed files:

- + debian/changelog
- + debian/clean
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/install
- + debian/rules
- + debian/source/format
- + debian/upstream/metadata
- + debian/watch


Changes:

=====================================
debian/changelog
=====================================
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+kmerresistance (2.0+git20180205.26467e9-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 07 Jun 2018 21:55:00 +0200


=====================================
debian/clean
=====================================
--- /dev/null
+++ b/debian/clean
@@ -0,0 +1 @@
+kmerresistance


=====================================
debian/compat
=====================================
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+11


=====================================
debian/control
=====================================
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,21 @@
+Source: kmerresistance
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/kmerresistance
+Vcs-Git: https://salsa.debian.org/med-team/kmerresistance.git
+Homepage: https://bitbucket.org/genomicepidemiology/kmerresistance
+
+Package: kmerresistance
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: correlates mapped genes with the predicted species of WGS samples,
+ KmerResistance correlates mapped genes with the predicted species of WGS
+ samples, where this this allows for identification of genes in samples
+ which have been poorly sequenced or high accuracy predictions for
+ samples with contamination. KmerResistance has one dependency, namely
+ KMA to perform the mapping, which is also freely available.


=====================================
debian/copyright
=====================================
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,25 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: KmerResistance
+Upstream-Contact: plan at dtu.dk
+Source: https://bitbucket.org/genomicepidemiology/kmerresistance.git
+
+Files: *
+Copyright: 2015-2017, Philip Clausen, Technical University of Denmark
+License: Apache-2.0
+
+Files: debian/*
+Copyright: 2018 Andreas Tille <tille at debian.org>
+License: Apache-2.0
+
+License: Apache-2.0
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ .
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+ .
+ On Debian systems you can find the full text of the Apache-2.0
+ license at /usr/share/common-licenses/Apache-2.0.


=====================================
debian/install
=====================================
--- /dev/null
+++ b/debian/install
@@ -0,0 +1 @@
+kmerresistance	usr/bin


=====================================
debian/rules
=====================================
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,11 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+	dh $@
+
+override_dh_auto_build:
+	gcc $(CFLAGS) -o kmerresistance KmerResistance.c -lm $(LDFLAGS)


=====================================
debian/source/format
=====================================
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)


=====================================
debian/upstream/metadata
=====================================
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+  Author: Philip T. L. C. Clausen and Ea Zankari and Frank M. Aarestrup and Ole Lund
+  Title: Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data
+  Journal: Journal of Antimicrobial Chemotherapy
+  Year: 2016
+  Volume: 71
+  Number: 9
+  Pages: 2484-8
+  DOI: 10.1093/jac/dkw184
+  PMID: 27365186
+  URL: https://academic.oup.com/jac/article/71/9/2484/2238319
+  eprint: https://academic.oup.com/jac/article-pdf/71/9/2484/17430278/dkw184.pdf


=====================================
debian/watch
=====================================
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=4
+
+opts="mode=git,pretty=2.0+git%cd.%h" \
+    https://bitbucket.org/genomicepidemiology/kmerresistance.git HEAD



View it on GitLab: https://salsa.debian.org/med-team/kmerresistance/commit/958d2967121a9d9fc288acc0f917420af7a0964d

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