[med-svn] [Git][med-team/mothur][master] 6 commits: New upstream version 1.40.4

[Tomasz Buchert]

Tomasz Buchert pushed to branch master at Debian Med / mothur


Commits:
936db583 by Tomasz Buchert at 2018-06-16T15:57:21+02:00
New upstream version 1.40.4
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b8007e22 by Tomasz Buchert at 2018-06-16T15:57:29+02:00
Update upstream source from tag 'upstream/1.40.4'

Update to upstream version '1.40.4'
with Debian dir d4329b2f22f266db51bb9b45fd58fc9ca1f61cfc
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01cdb1a1 by Tomasz Buchert at 2018-06-16T15:58:29+02:00
release

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4e6744bc by Tomasz Buchert at 2018-06-26T18:03:52+02:00
New upstream version 1.40.5
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5c04b176 by Tomasz Buchert at 2018-06-26T18:03:58+02:00
Update upstream source from tag 'upstream/1.40.5'

Update to upstream version '1.40.5'
with Debian dir 3cc5e360094112fbecbc9a8bc4f95152955910a0
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0362eeda by Tomasz Buchert at 2018-06-26T18:05:02+02:00
release

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30 changed files:

- Makefile
- Mothur.xcodeproj/project.pbxproj
- debian/changelog
- source/calculators/ace.h
- source/classifier/aligntree.h
- source/commands/chimeravsearchcommand.cpp
- source/commands/classifyseqscommand.cpp
- source/commands/clustercommand.cpp
- source/commands/clustercommand.h
- source/commands/clusterdoturcommand.cpp
- source/commands/clusterdoturcommand.h
- source/commands/clustersplitcommand.cpp
- source/commands/getlineagecommand.cpp
- source/commands/getmetacommunitycommand.cpp
- source/commands/makecontigscommand.cpp
- source/commands/makecontigscommand.h
- source/commands/mgclustercommand.cpp
- source/commands/mgclustercommand.h
- source/commands/nocommands.cpp
- source/commands/pcrseqscommand.cpp
- source/commands/preclustercommand.cpp
- source/commands/screenseqscommand.cpp
- source/commands/seqerrorcommand.cpp
- source/commands/trimseqscommand.cpp
- + source/datastructures/compare.h
- source/datastructures/listvector.hpp
- source/datastructures/qualityscores.cpp
- source/datastructures/qualityscores.h
- source/datastructures/sharedrabundvectors.cpp
- source/engine.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mothur/compare/0e0d1804d73df1e4d283bd446d4e7abfb3acb296...0362eeda494d593e077494c462ae6f375e111e1c

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View it on GitLab: https://salsa.debian.org/med-team/mothur/compare/0e0d1804d73df1e4d283bd446d4e7abfb3acb296...0362eeda494d593e077494c462ae6f375e111e1c
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