[med-svn] [Git][med-team/bali-phy][master] 4 commits: Move single test scripts into single script and fix the new location of examples

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bali-phy


Commits:
ff28db02 by Andreas Tille at 2018-03-11T07:46:27+01:00
Move single test scripts into single script and fix the new location of examples

- - - - -
eb4c937c by Andreas Tille at 2018-03-11T07:47:43+01:00
Install autopkgtest script into usr/share/doc to enable users reproducing the tests on their local machine

- - - - -
b0663953 by Andreas Tille at 2018-03-11T07:51:29+01:00
Users are not permitted to write to /usr/share/doc - move examples to temporary dir to let the script work under all circumstances

- - - - -
c7ca5c91 by Andreas Tille at 2018-03-11T08:15:33+01:00
Upload to unstable

- - - - -


11 changed files:

- + debian/README.test
- debian/changelog
- + debian/docs
- debian/tests/control
- − debian/tests/help
- + debian/tests/run-unit-test
- − debian/tests/small-A
- − debian/tests/small-analysis
- − debian/tests/small-no-A
- − debian/tests/small-test
- − debian/tests/version


Changes:

=====================================
debian/README.test
=====================================
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by executing
+
+    sh run-unit-test
+
+in order to confirm its integrity.


=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,5 +1,5 @@
-bali-phy (3.0.2+dfsg-1) UNRELEASED; urgency=medium
+bali-phy (3.0.2+dfsg-1) unstable; urgency=medium
 
   * Initial release (Closes: #891971).
 
- -- Benjamin Redelings <benjamin.redelings at gmail.com>  Tue, 06 Mar 2018 22:01:35 -0500
+ -- Benjamin Redelings <benjamin.redelings at gmail.com>  Sun, 11 Mar 2018 07:28:17 +0100


=====================================
debian/docs
=====================================
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,2 @@
+debian/README.test
+debian/tests/run-unit-test


=====================================
debian/tests/control
=====================================
--- a/debian/tests/control
+++ b/debian/tests/control
@@ -1 +1,3 @@
-Tests: version, help, small-test, small-A, small-no-A, small-analysis
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/help deleted
=====================================
--- a/debian/tests/help
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/bin/sh
-bali-phy --help
-


=====================================
debian/tests/run-unit-test
=====================================
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,23 @@
+#!/bin/sh
+
+set -e
+
+pkg=bali-phy
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+
+bali-phy --version
+bali-phy --help
+
+bali-phy sequences/5S-rRNA/5d.fasta --test --seed=0
+bali-phy sequences/5S-rRNA/5d.fasta --iter=50 --seed=0
+bali-phy sequences/5S-rRNA/5d.fasta --iter=200 -Inone --seed=0
+bali-phy sequences/5S-rRNA/5d.fasta --iter=100
+bp-analyze 5d-1


=====================================
debian/tests/small-A deleted
=====================================
--- a/debian/tests/small-A
+++ /dev/null
@@ -1,2 +0,0 @@
-#!/bin/sh
-bali-phy /usr/share/bali-phy/examples/sequences/5S-rRNA/5d.fasta --iter=50 --seed=0
\ No newline at end of file


=====================================
debian/tests/small-analysis deleted
=====================================
--- a/debian/tests/small-analysis
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/bin/sh
-bali-phy /usr/share/bali-phy/examples/sequences/5S-rRNA/5d.fasta --iter=100
-bp-analyze 5d-1


=====================================
debian/tests/small-no-A deleted
=====================================
--- a/debian/tests/small-no-A
+++ /dev/null
@@ -1,2 +0,0 @@
-#!/bin/sh
-bali-phy /usr/share/bali-phy/examples/sequences/5S-rRNA/5d.fasta --iter=200 -Inone --seed=0
\ No newline at end of file


=====================================
debian/tests/small-test deleted
=====================================
--- a/debian/tests/small-test
+++ /dev/null
@@ -1,2 +0,0 @@
-#!/bin/sh
-bali-phy /usr/share/bali-phy/examples/sequences/5S-rRNA/5d.fasta --test --seed=0
\ No newline at end of file


=====================================
debian/tests/version deleted
=====================================
--- a/debian/tests/version
+++ /dev/null
@@ -1,2 +0,0 @@
-#!/bin/sh
-bali-phy --version



View it on GitLab: https://salsa.debian.org/med-team/bali-phy/compare/c0638bd4f901995849294281af91e79eaad964cc...c7ca5c91ecb55344e15ebece3a8fba806be6f23f

---
View it on GitLab: https://salsa.debian.org/med-team/bali-phy/compare/c0638bd4f901995849294281af91e79eaad964cc...c7ca5c91ecb55344e15ebece3a8fba806be6f23f
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