[med-svn] [Git][med-team/blasr][master] 4 commits: Support for HDF5 1.10.1

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / blasr


Commits:
82aa68ff by Andreas Tille at 2018-03-11T17:59:16+01:00
Support for HDF5 1.10.1

- - - - -
f60a78df by Andreas Tille at 2018-03-11T18:01:54+01:00
more cme-ish sequence of entries, Standards-Version: 4.1.3

- - - - -
ff3689b0 by Andreas Tille at 2018-03-11T18:09:42+01:00
debhelper 11

- - - - -
7d133c72 by Andreas Tille at 2018-03-11T18:10:57+01:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,6 @@
-blasr (5.3+0-2) UNRELEASED; urgency=low
+blasr (5.3+0-2) unstable; urgency=low
+
+  * Team upload
 
   [ Steffen Moeller ]
   * debian/upstream/metadata: Added references to OMICtools and RRID
@@ -6,7 +8,17 @@ blasr (5.3+0-2) UNRELEASED; urgency=low
   [ Afif Elghraoui ]
   * Add README.source
 
- -- Afif Elghraoui <afif at debian.org>  Fri, 11 Aug 2017 16:33:50 -0400
+  [ Gilles Filippini ]
+  * Support for HDF5 1.10.1
+    Closes: #892630
+
+  [ Andreas Tille ]
+  * d/control:
+     - more cme-ish sequence of entries
+     - Standards-Version: 4.1.3
+  * debhelper 11
+
+ -- Andreas Tille <tille at debian.org>  Sun, 11 Mar 2018 18:02:22 +0100
 
 blasr (5.3+0-1) unstable; urgency=medium
 


=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11


=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -1,10 +1,10 @@
 Source: blasr
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif at debian.org>
+Section: science
+Priority: optional
 Build-Depends:
-	debhelper (>= 9),
+	debhelper (>= 11~),
 	python,
 	cmake,
 	libboost-dev,
@@ -12,10 +12,10 @@ Build-Depends:
 	zlib1g-dev,
 	libpbseq-dev (>= 0~20160912),
 	libpbbam-dev,
-Standards-Version: 3.9.8
-Homepage: https://github.com/PacificBiosciences/blasr
-Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git
+Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/blasr.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git
+Homepage: https://github.com/PacificBiosciences/blasr
 
 Package: blasr
 Architecture: any


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -20,11 +20,17 @@ export LIBPBDATA_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
 export LIBPBIHDF_INC=$(PBDATA_ROOT_DIR)/hdf
 export LIBPBIHDF_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
 
+# Needed for HDF5 1.10.1 support
+HDF5_VERSION := $(shell grep 'HDF5 Version' $(HDF5_LIB)/libhdf5.settings | awk '{print $$3}')
+ifeq (yes,$(shell dpkg --compare-versions $(HDF5_VERSION) '>=' 1.10.1 && echo yes))
+export DEB_CXXFLAGS_MAINT_APPEND=-DHAVE_HDF5_1_10_1
+endif
+
 # CPPFLAGS apparently aren't exported for bam2bax/bax2bam
 export DEB_CXXFLAGS_MAINT_PREPEND = $(CPPFLAGS) -I$(PBDATA_ROOT_DIR)
 
 %:
-	dh $@ --parallel
+	dh $@
 
 override_dh_auto_configure:
 	./configure.py --shared



View it on GitLab: https://salsa.debian.org/med-team/blasr/compare/2d8806232619d07f03a87bf7114882225aa2eb16...7d133c72cce3493b730e44b28c462bd1ee97494b

---
View it on GitLab: https://salsa.debian.org/med-team/blasr/compare/2d8806232619d07f03a87bf7114882225aa2eb16...7d133c72cce3493b730e44b28c462bd1ee97494b
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