[med-svn] [Git][med-team/transdecoder][master] 11 commits: New upstream version (no need to repackage since binary files are now removed upstream)

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / transdecoder


Commits:
cdfe4fb0 by Andreas Tille at 2018-02-19T11:48:57+01:00
New upstream version (no need to repackage since binary files are now removed upstream)

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1cc2e64b by Andreas Tille at 2018-02-19T11:49:37+01:00
New upstream version 5.0.1
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f1997c25 by Andreas Tille at 2018-02-19T11:50:04+01:00
Update upstream source from tag 'upstream/5.0.1'

Update to upstream version '5.0.1'
with Debian dir d18ad1539cced7cbbda07eda2fff4f316639dc8c
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857f9342 by Andreas Tille at 2018-02-19T14:20:58+01:00
Upstream changelog: cdhit has been removed and replaced by our own fast method for removing redundancies

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27d6ed9b by Andreas Tille at 2018-02-19T14:21:41+01:00
Standards-Version: 4.1.3

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f73d1659 by Andreas Tille at 2018-02-19T14:22:02+01:00
debhelper 11

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b8e0b970 by Andreas Tille at 2018-02-19T15:07:04+01:00
Add missing Depends: r-base-core, python

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ef34025c by Andreas Tille at 2018-02-19T15:08:48+01:00
do not parse d/changelog

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02c03e8d by Andreas Tille at 2018-02-19T15:10:34+01:00
fix permissions

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694c2d8f by Andreas Tille at 2018-02-19T15:10:51+01:00
parallel is now default

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ff742845 by Andreas Tille at 2018-03-16T17:50:30+01:00
Upload to unstable

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30 changed files:

- .gitmodules
- Changelog.txt
- Makefile
- + PerlLib/DelimParser.pm
- + PerlLib/PWM.pm
- + PerlLib/Pipeliner.pm
- + PerlLib/Process_cmd.pm
- + PerlLib/overlapping_nucs.ph
- README
- TransDecoder.LongOrfs
- TransDecoder.Predict
- debian/changelog
- debian/compat
- debian/control
- − debian/patches/cd-hit-est-rename
- debian/patches/fix-whatis
- debian/patches/series
- debian/rules
- debian/watch
- sample_data/Makefile
- sample_data/cufflinks_example/cleanme.pl
- sample_data/cufflinks_example/runMe.sh
- sample_data/pasa_example/cleanme.pl
- sample_data/simple_transcriptome_target/Makefile
- sample_data/simple_transcriptome_target/cleanme.pl
- + sample_data/simple_transcriptome_target/genome_alignments.gmap.gff3.gz
- sample_data/simple_transcriptome_target/runMe.sh
- + sample_data/stringtie_example/Makefile
- + sample_data/stringtie_example/cleanme.pl
- + sample_data/stringtie_example/runMe.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/transdecoder/compare/01e400fd893526f18183e92f46ae6c197055bf8a...ff74284551165471bfa6c0fa8b1b979d5131302c

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View it on GitLab: https://salsa.debian.org/med-team/transdecoder/compare/01e400fd893526f18183e92f46ae6c197055bf8a...ff74284551165471bfa6c0fa8b1b979d5131302c
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