[med-svn] [Git][med-team/transdecoder][upstream] New upstream version 5.0.1

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / transdecoder


Commits:
1cc2e64b by Andreas Tille at 2018-02-19T11:49:37+01:00
New upstream version 5.0.1
- - - - -


30 changed files:

- .gitmodules
- Changelog.txt
- Makefile
- + PerlLib/DelimParser.pm
- + PerlLib/PWM.pm
- + PerlLib/Pipeliner.pm
- + PerlLib/Process_cmd.pm
- + PerlLib/overlapping_nucs.ph
- README
- TransDecoder.LongOrfs
- TransDecoder.Predict
- sample_data/Makefile
- sample_data/cufflinks_example/cleanme.pl
- sample_data/cufflinks_example/runMe.sh
- sample_data/pasa_example/cleanme.pl
- sample_data/simple_transcriptome_target/Makefile
- sample_data/simple_transcriptome_target/cleanme.pl
- + sample_data/simple_transcriptome_target/genome_alignments.gmap.gff3.gz
- sample_data/simple_transcriptome_target/runMe.sh
- + sample_data/stringtie_example/Makefile
- + sample_data/stringtie_example/cleanme.pl
- + sample_data/stringtie_example/runMe.sh
- + sample_data/stringtie_example/stringtie_merged.gtf
- + sample_data/stringtie_example/stringtie_merged.transcripts.fasta
- + util/PWM/README.md
- + util/PWM/__deprecated/build_atgPWM.pl
- + util/PWM/__deprecated/build_pwm.pl
- + util/PWM/__deprecated/optimize_atgPWM.pl
- + util/PWM/__deprecated/optimize_atgPWM_+-.pl
- + util/PWM/__deprecated/optimize_atgPWM_+-.predict.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/transdecoder/commit/1cc2e64b47f087c83bfc4f84cf2705b5894021da

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View it on GitLab: https://salsa.debian.org/med-team/transdecoder/commit/1cc2e64b47f087c83bfc4f84cf2705b5894021da
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