[med-svn] [Git][med-team/jellyfish][master] 2 commits: build fastq2sam

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / jellyfish


Commits:
adaccec5 by Michael R. Crusoe at 2018-03-16T10:17:17-07:00
build fastq2sam

- - - - -
e6c05efc by Michael R. Crusoe at 2018-03-16T13:51:41-07:00
Incorporates suggestions from the Multiarch hinter.

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/jellyfish-examples.install
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+jellyfish (2.2.8-3) unstable; urgency=medium
+
+  * Build and install fastq2sam, which fixes Debci tests
+  * Incorporates suggestions from the Multiarch hinter.
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Fri, 16 Mar 2018 10:57:09 -0700
+
 jellyfish (2.2.8-2) unstable; urgency=medium
 
   * Add the missing small_mers.sh file, courtesy upstream.


=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -45,6 +45,7 @@ Description: count k-mers in DNA sequences
 
 Package: libjellyfish-2.0-2
 Architecture: any
+Multi-Arch: same
 Section: libs
 Depends: ${shlibs:Depends},
          ${misc:Depends}
@@ -68,6 +69,7 @@ Description: count k-mers in DNA sequences (dynamic library of jellyfish)
 
 Package: libjellyfish-2.0-dev
 Architecture: any
+Multi-Arch: same
 Section: libdevel
 Depends: ${misc:Depends},
          libjellyfish-2.0-2 (= ${binary:Version})
@@ -114,6 +116,7 @@ Description: count k-mers in DNA sequences (Python bindings of jellyfish)
 
 Package: libjellyfish-perl
 Architecture: any
+Multi-Arch: same
 Section: perl
 Depends: ${perl:Depends},
          ${misc:Depends},


=====================================
debian/jellyfish-examples.install
=====================================
--- a/debian/jellyfish-examples.install
+++ b/debian/jellyfish-examples.install
@@ -1,2 +1,3 @@
 bin/.libs/generate_sequence	usr/lib/jellyfish/bin
 bin/.libs/test_all		usr/lib/jellyfish/bin
+bin/.libs/fastq2sam		usr/lib/jellyfish/bin


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -63,7 +63,7 @@ override_dh_clean:
 override_dh_auto_build:
 	mkdir -p debian/tmp_save_tests
 	cp -a tests/* debian/tmp_save_tests
-	dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all
+	dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
 #	cd doc ;  RUBYLIB=$PWD PATH=$PATH:../bin make clean all ; cd ..
 #	broken
 



View it on GitLab: https://salsa.debian.org/med-team/jellyfish/compare/3952220cbaca160a19165bc19ea655ab5f66a6bc...e6c05efc11a550bf04f3d3a81c29d6dcf20f9470

---
View it on GitLab: https://salsa.debian.org/med-team/jellyfish/compare/3952220cbaca160a19165bc19ea655ab5f66a6bc...e6c05efc11a550bf04f3d3a81c29d6dcf20f9470
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.alioth.debian.org/pipermail/debian-med-commit/attachments/20180316/c5b653d4/attachment-0001.html>