[med-svn] [Git][med-team/bedops][master] 19 commits: New upstream version 2.4.32+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bedops


Commits:
fe8d9e15 by Andreas Tille at 2018-03-20T14:53:19+01:00
New upstream version 2.4.32+dfsg
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1640a0ee by Andreas Tille at 2018-03-20T14:53:32+01:00
Update upstream source from tag 'upstream/2.4.32+dfsg'

Update to upstream version '2.4.32+dfsg'
with Debian dir ca39fade8cbe99742b7769a3620d37c05a8632b3
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f50a56bf by Andreas Tille at 2018-03-20T15:05:12+01:00
New upstream version

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ddcb08a1 by Andreas Tille at 2018-03-20T15:06:00+01:00
cme fix dpkg-control

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a723abe4 by Andreas Tille at 2018-03-20T15:06:29+01:00
debhelper 11

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a86bb40f by Andreas Tille at 2018-03-20T15:07:42+01:00
Fix changelog

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c4b9eaaa by Andreas Tille at 2018-03-20T15:16:42+01:00
Spelling

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143f8992 by Andreas Tille at 2018-03-20T15:17:35+01:00
DEP5 fix

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852691cf by Andreas Tille at 2018-03-20T15:18:13+01:00
hardening=+all

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f923ce1f by Andreas Tille at 2018-03-20T15:24:58+01:00
Fix MathJax replacement

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6886aad3 by Andreas Tille at 2018-03-20T15:34:25+01:00
Build-Depends: s/python-sphinx/python3-sphinx/

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467df5ae by Andreas Tille at 2018-03-20T15:36:29+01:00
Remove useless dirs file

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83022117 by Andreas Tille at 2018-03-20T15:37:28+01:00
Typo

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21294c59 by Andreas Tille at 2018-03-20T15:43:47+01:00
Create separate doc package to avoid arch-dep-package-has-big-usr-share

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3db88ce6 by Andreas Tille at 2018-03-20T15:50:53+01:00
python3-sphinx seems to depend python3-distutils (is this a bug in python3-distutils to not explicitly depend from it???)

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d0dc575d by Andreas Tille at 2018-03-20T16:20:33+01:00
README.Debian is installed automatically, README.source is not needed in binary - the debian/ dir was missing anyway.  Removing this useless file

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9821d82f by Andreas Tille at 2018-03-20T16:27:22+01:00
Fix typo

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b742d8d6 by Andreas Tille at 2018-03-20T16:34:34+01:00
Move docbase control file to doc package

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d20fe563 by Andreas Tille at 2018-03-20T16:49:47+01:00
Propagate hardening options

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30 changed files:

- Makefile
- README.md
- applications/bed/bedextract/src/ExtractRows.cpp
- applications/bed/bedextract/src/Makefile
- applications/bed/bedextract/src/Makefile.darwin
- applications/bed/bedmap/src/Bedmap.cpp
- applications/bed/bedmap/src/Input.hpp
- applications/bed/bedmap/src/Makefile
- applications/bed/bedmap/src/Makefile.darwin
- applications/bed/bedmap/src/TDefs.hpp
- applications/bed/bedops/src/BedPadReader.hpp
- applications/bed/bedops/src/Bedops.cpp
- applications/bed/bedops/src/Input.hpp
- applications/bed/bedops/src/Makefile
- applications/bed/bedops/src/Makefile.darwin
- applications/bed/closestfeats/src/BedReader.hpp
- applications/bed/closestfeats/src/ClosestFeature.cpp
- applications/bed/closestfeats/src/Input.hpp
- applications/bed/closestfeats/src/Makefile
- applications/bed/closestfeats/src/Makefile.darwin
- applications/bed/closestfeats/src/Printers.hpp
- applications/bed/conversion/src/Makefile
- applications/bed/conversion/src/Makefile.darwin
- applications/bed/conversion/src/convert2bed.c
- applications/bed/conversion/src/convert2bed.h
- applications/bed/sort-bed/src/CheckSort.cpp
- applications/bed/sort-bed/src/Makefile
- applications/bed/sort-bed/src/Makefile.darwin
- applications/bed/sort-bed/src/Sort.cpp
- applications/bed/sort-bed/src/SortDetails.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bedops/compare/9d517a3eb0b50415b02ae5c6ad318ddae89c7451...d20fe5632c2eab5fb3d0ded2e9ebb38e3e1f5ae7

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View it on GitLab: https://salsa.debian.org/med-team/bedops/compare/9d517a3eb0b50415b02ae5c6ad318ddae89c7451...d20fe5632c2eab5fb3d0ded2e9ebb38e3e1f5ae7
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