[med-svn] [Git][med-team/trinityrnaseq][master] 3 commits: Update watch to grab sample data

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
a0c58d95 by Michael R. Crusoe at 2018-03-28T07:03:57-07:00
Update watch to grab sample data

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e476fc2e by Michael R. Crusoe at 2018-03-28T07:04:12-07:00
New upstream version 2.6.5+dfsg
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8187ddaf by Michael R. Crusoe at 2018-03-28T07:05:07-07:00
2.6.5+dfsg-1

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29 changed files:

- Analysis/DifferentialExpression/GOplot.Rscript
- + Analysis/DifferentialExpression/plot_log2FC_hist.Rscript
- Analysis/DifferentialExpression/rename_matrix_feature_identifiers.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- + Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl
- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- + Analysis/SuperTranscripts/_misc/aln_before_after.pl
- + Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
- + Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- + Analysis/SuperTranscripts/pylib/DP_matrix.py
- + Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
- + Analysis/SuperTranscripts/pylib/GraphCycleException.py
- + Analysis/SuperTranscripts/pylib/Node_alignment.py
- + Analysis/SuperTranscripts/pylib/Node_path.py
- + Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- + Analysis/SuperTranscripts/pylib/TGLOBALS.py
- + Analysis/SuperTranscripts/pylib/TGraph.py
- + Analysis/SuperTranscripts/pylib/TNode.py
- + Analysis/SuperTranscripts/pylib/Topological_sort.py
- + Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
- + Analysis/SuperTranscripts/pylib/Trinity_util.py
- + Analysis/SuperTranscripts/pylib/__init__.py
- Butterfly/src/src/TransAssembly_allProbPaths.java
- Changelog.txt
- Chrysalis/Makefile
- Makefile
- PyLib/Pipeliner.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/9cead657dc8e6265d6370293e1ea6acc12d4364d...8187ddaf3518c2c92590754c668267eea77a5d56

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/9cead657dc8e6265d6370293e1ea6acc12d4364d...8187ddaf3518c2c92590754c668267eea77a5d56
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