[med-svn] [Git][med-team/trinityrnaseq][upstream] New upstream version 2.6.5+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / trinityrnaseq


Commits:
e6bd23d0 by Michael R. Crusoe at 2018-02-17T07:53:33-08:00
New upstream version 2.6.5+dfsg
- - - - -


29 changed files:

- Analysis/DifferentialExpression/GOplot.Rscript
- + Analysis/DifferentialExpression/plot_log2FC_hist.Rscript
- Analysis/DifferentialExpression/rename_matrix_feature_identifiers.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- + Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl
- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- + Analysis/SuperTranscripts/_misc/aln_before_after.pl
- + Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
- + Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- + Analysis/SuperTranscripts/pylib/DP_matrix.py
- + Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
- + Analysis/SuperTranscripts/pylib/GraphCycleException.py
- + Analysis/SuperTranscripts/pylib/Node_alignment.py
- + Analysis/SuperTranscripts/pylib/Node_path.py
- + Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- + Analysis/SuperTranscripts/pylib/TGLOBALS.py
- + Analysis/SuperTranscripts/pylib/TGraph.py
- + Analysis/SuperTranscripts/pylib/TNode.py
- + Analysis/SuperTranscripts/pylib/Topological_sort.py
- + Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
- + Analysis/SuperTranscripts/pylib/Trinity_util.py
- + Analysis/SuperTranscripts/pylib/__init__.py
- Butterfly/src/src/TransAssembly_allProbPaths.java
- Changelog.txt
- Chrysalis/Makefile
- Makefile
- PyLib/Pipeliner.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/commit/e6bd23d0d1b8bfc8d59214e3f2753f254a971ade

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