[med-svn] [Git][med-team/trinityrnaseq][upstream] New upstream version 2.6.6+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / trinityrnaseq


Commits:
a7e74199 by Michael R. Crusoe at 2018-03-28T08:15:43-07:00
New upstream version 2.6.6+dfsg
- - - - -


30 changed files:

- Analysis/DifferentialExpression/PtR
- Analysis/DifferentialExpression/cut_tree_into_clusters.pl
- Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
- Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl
- Analysis/DifferentialExpression/matrix_to_gene_plots.pl
- Analysis/DifferentialExpression/plot_expression_patterns.pl
- Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl
- Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/DifferentialExpression/run_GOseq.pl
- Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl
- Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.tiers_to_boxplot.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Node_path.py
- Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- Analysis/SuperTranscripts/pylib/TGraph.py
- Changelog.txt
- − Docker/Changelog.txt
- Docker/Dockerfile
- Docker/VERSION.txt
- Trinity
- trinity_ext_sample_data/test_VariantCalling/Makefile
- − trinity_ext_sample_data/test_VariantCalling/runMe.sh
- + util/misc/Trinity_genome_aligned_gff3_to_regrouped_genes_gtf.pl
- util/misc/contig_ExN50_statistic.pl
- + util/misc/filter_out_accs_from_fasta.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/commit/a7e74199f56cb07688560b2a148b7bedf8709d36

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