[med-svn] [Git][med-team/trinityrnaseq][master] 8 commits: New upstream version 2.6.5+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
e6bd23d0 by Michael R. Crusoe at 2018-02-17T07:53:33-08:00
New upstream version 2.6.5+dfsg
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8e83b35d by Michael R. Crusoe at 2018-03-28T07:11:50-07:00
fix merge error

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6cd5e00e by Michael R. Crusoe at 2018-03-28T07:20:13-07:00
remove hpc_conf from docs list

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bcfbd8c4 by Michael R. Crusoe at 2018-03-28T08:08:29-07:00
find new upstream release

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a7e74199 by Michael R. Crusoe at 2018-03-28T08:15:43-07:00
New upstream version 2.6.6+dfsg
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8570d63e by Michael R. Crusoe at 2018-03-28T08:18:52-07:00
Update upstream source from tag 'upstream/2.6.6+dfsg'

Update to upstream version '2.6.6+dfsg'
with Debian dir 57da8dad63cc191474b1be4d8c185e2358b5ef6e
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c21a312d by Michael R. Crusoe at 2018-03-28T08:20:28-07:00
2.6.6+dfsg-1

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baf7d957 by Michael R. Crusoe at 2018-03-28T10:00:19-07:00
build and ship seqtk-trinity

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30 changed files:

- Analysis/DifferentialExpression/PtR
- Analysis/DifferentialExpression/cut_tree_into_clusters.pl
- Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
- Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl
- Analysis/DifferentialExpression/matrix_to_gene_plots.pl
- Analysis/DifferentialExpression/plot_expression_patterns.pl
- Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl
- Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/DifferentialExpression/run_GOseq.pl
- Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl
- Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.tiers_to_boxplot.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Node_path.py
- Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- Analysis/SuperTranscripts/pylib/TGraph.py
- Changelog.txt
- − Docker/Changelog.txt
- Docker/Dockerfile
- Docker/VERSION.txt
- Trinity
- debian/changelog
- debian/control
- debian/patches/adjust-trimmomatic-adapters-path
- debian/patches/disable-version-check
- debian/patches/fix_system_paths


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/8187ddaf3518c2c92590754c668267eea77a5d56...baf7d95721eac1adcf411a1f8fd6cf5a1c68c865

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/8187ddaf3518c2c92590754c668267eea77a5d56...baf7d95721eac1adcf411a1f8fd6cf5a1c68c865
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