[med-svn] [Git][med-team/igv][master] 7 commits: New upstream version 2.4.6

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / igv


Commits:
d56c16b0 by Andreas Tille at 2018-01-22T09:48:28+01:00
New upstream version 2.4.6
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01f6b349 by Andreas Tille at 2018-01-22T09:50:59+01:00
Update upstream source from tag 'upstream/2.4.6'

Update to upstream version '2.4.6'
with Debian dir 2f5cd20272da122a57e962fbe4ff63d94d78897e
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9d7847d2 by Andreas Tille at 2018-01-22T09:51:52+01:00
New upstream version

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5ca3490a by Andreas Tille at 2018-01-22T09:52:34+01:00
debhelper 11

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5944e0df by Andreas Tille at 2018-01-22T10:03:22+01:00
New upstream version 2.4.6+dfsg
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42325df5 by Andreas Tille at 2018-01-22T10:05:53+01:00
Update upstream source from tag 'upstream/2.4.6+dfsg'

Update to upstream version '2.4.6+dfsg'
with Debian dir f7ababbd2e8b4616c022561ca7139497c919911a
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eb4e283d by Andreas Tille at 2018-01-22T11:07:54+01:00
Upload to unstable

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30 changed files:

- .gitignore
- build.xml
- build_macros.xml
- debian/changelog
- debian/compat
- debian/control
- debian/patches/01-build.xml
- genomes/db/hg38/hg38.json
- + genomes/db/ws235/ws235_dataServerRegistry.txt
- scripts/build-tools.xml
- scripts/igv_build.xml
- src/org/broad/igv/batch/CommandExecutor.java
- src/org/broad/igv/feature/genome/Genome.java
- src/org/broad/igv/feature/genome/GenomeDescriptor.java
- src/org/broad/igv/feature/genome/GenomeManager.java
- src/org/broad/igv/feature/genome/GenomeZipDescriptor.java
- src/org/broad/igv/feature/genome/fasta/FastaBlockCompressedSequence.java
- src/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
- src/org/broad/igv/ga4gh/OAuthUtils.java
- src/org/broad/igv/prefs/Constants.java
- src/org/broad/igv/prefs/PreferencesManager.java
- src/org/broad/igv/prefs/preferences.tab
- src/org/broad/igv/sam/AlignmentDataManager.java
- src/org/broad/igv/sam/AlignmentTileLoader.java
- src/org/broad/igv/sam/AlignmentTrack.java
- src/org/broad/igv/sam/BaseAlignmentCounts.java
- src/org/broad/igv/sam/CoverageTrack.java
- src/org/broad/igv/sam/InsertionManager.java
- src/org/broad/igv/sam/ReadStats.java
- src/org/broad/igv/sam/SpliceJunctionTrack.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/compare/7b26c325993325c7ee934a8311cf0b68d139f538...eb4e283da7747b760b2d9a0f4f89fa48977768ab

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View it on GitLab: https://salsa.debian.org/med-team/igv/compare/7b26c325993325c7ee934a8311cf0b68d139f538...eb4e283da7747b760b2d9a0f4f89fa48977768ab
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