[med-svn] [Git][med-team/htslib][master] 3 commits: Fix symbols file.

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / htslib


Commits:
3ca6d381 by Andreas Tille at 2018-05-03T11:40:11+02:00
Fix symbols file.
    Note: version 1.8 drops symbol cram_nop_decode_reset without bumping
    soversion but this should be no issue according to upstream
    (https://github.com/samtools/htslib/issues/695)

- - - - -
f2a8dc19 by Andreas Tille at 2018-05-03T11:55:11+02:00
Remove deactivated patch

- - - - -
3c62e7eb by Andreas Tille at 2018-05-03T11:55:22+02:00
Upload to experimental

- - - - -


3 changed files:

- debian/changelog
- debian/libhts2.symbols
- − debian/patches/fix_pkg-config.patch


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,11 +1,13 @@
-htslib (1.8-1) UNRELEASED; urgency=medium
+htslib (1.8-1) experimental; urgency=medium
 
   * New upstream version
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.1.4
   * debhelper 11
-  TODO: version 1.8 drops symbol cram_nop_decode_reset without bumping soversion
-         -> https://github.com/samtools/htslib/issues/695
+  * Fix symbols file.
+    Note: version 1.8 drops symbol cram_nop_decode_reset without bumping
+    soversion but this should be no issue according to upstream
+    (https://github.com/samtools/htslib/issues/695)
 
  -- Andreas Tille <tille at debian.org>  Fri, 27 Apr 2018 17:16:43 +0200
 


=====================================
debian/libhts2.symbols
=====================================
--- a/debian/libhts2.symbols
+++ b/debian/libhts2.symbols
@@ -274,7 +274,7 @@ libhts.so.2 libhts2 #MINVER#
  cram_decoder_init at Base 1.0
  cram_dependent_data_series at Base 1.2.1
  cram_dopen at Base 1.0
- cram_drain_rqueue at Base 1.8-1
+ cram_drain_rqueue at Base 1.8
  cram_encode_compression_header at Base 1.0
  cram_encode_container at Base 1.0
  cram_encode_slice_header at Base 1.0
@@ -341,7 +341,6 @@ libhts.so.2 libhts2 #MINVER#
  cram_new_container at Base 1.0
  cram_new_metrics at Base 1.0
  cram_new_slice at Base 1.0
-#MISSING: 1.8-1# cram_nop_decode_reset at Base 1.4.1
  cram_open at Base 1.0
  cram_put_bam_seq at Base 1.0
  cram_read_SAM_hdr at Base 1.0


=====================================
debian/patches/fix_pkg-config.patch deleted
=====================================
--- a/debian/patches/fix_pkg-config.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-Description: This patch is deactivated
-  --> see https://bugs.debian.org/881170
-       debian/patches/fix_pkg-config.patch is incorrect
- .
- Cflags are just pointing to system default include dir.  However, files are in
- subdirectory which cram/*.h input files are kept in.  To be found pkg-config
- needs to point to this dir
-Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 09 Feb 2017 13:39:57 +0100
-
---- a/htslib.pc.in
-+++ b/htslib.pc.in
-@@ -9,7 +9,7 @@ static_libs=@static_LIBS@
- Name: htslib
- Description: C library for high-throughput sequencing data formats
- Version: @-PACKAGE_VERSION@
--Cflags: -I${includedir}
-+Cflags: -I${includedir}/htslib
- Libs: -L${libdir} -lhts
- Libs.private: -L${libdir} @private_LIBS@ -lhts -lm -lpthread
- Requires.private: zlib @pc_requires@



View it on GitLab: https://salsa.debian.org/med-team/htslib/compare/8aaefae6089e0b5fd6ce0c73961a86e409b39550...3c62e7eb2a2e5d5feeec2f9e709364a1cb55ba5c

---
View it on GitLab: https://salsa.debian.org/med-team/htslib/compare/8aaefae6089e0b5fd6ce0c73961a86e409b39550...3c62e7eb2a2e5d5feeec2f9e709364a1cb55ba5c
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