[med-svn] [Git][med-team/euler2][master] Package review

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / euler2


Commits:
18020918 by Steffen Möller at 2018-05-03T17:39:22+02:00
Package review

- - - - -


4 changed files:

- debian/control
- + debian/patches/fix_check.patch
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -4,9 +4,9 @@ Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 10)
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/euler2.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/euler2.git
+Standards-Version: 4.1.3
+Vcs-Browser: https://salsa.debian.org/med-team/euler2
+Vcs-Git: https://salsa.debian.org/med-team/euler2.git
 Homepage: http://nbcr.sdsc.edu/euler/document.htm
 
 Package: euler2


=====================================
debian/patches/fix_check.patch
=====================================
--- /dev/null
+++ b/debian/patches/fix_check.patch
@@ -0,0 +1,13 @@
+Index: euler2/makealn.c
+===================================================================
+--- euler2.orig/makealn.c
++++ euler2/makealn.c
+@@ -22,7 +22,7 @@ char    htmlout, caption[2000], ***conte
+ void initenv(int argc, char **argv);
+ void read_one_inteval(FILE *fp, READINTERVAL *readinterval, int num_intv);
+ 
+-main(int argc, char **argv)
++int main(int argc, char **argv)
+ {
+   int i, m, l, j, k, n;
+   int max_leg, max_name_leg;


=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -4,3 +4,4 @@
 20_perl_warnings.patch
 20_exit_better_than_crash.patch
 10_increase_maq_seq.patch
+fix_check.patch


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -2,3 +2,18 @@
 
 %:
 	dh $@
+
+override_dh_auto_test:
+	@echo "Not installing"
+
+override_dh_auto_install:
+	@echo "Not testing"
+
+override_dh_auto_clean:
+	if [ -r Makefile ]; then $(MAKE) clean; fi
+	rm -f errcorr_fin_mem errcorr_pair_mem euler_cons euler_db \
+	 euler_et makealn makeintv over-align-all over-align-phrap \
+	 over-repeat-end over-repeat-end-po over-repeat-new overlapper-all \
+	 pairreads pairreads1 pairreads2 pairreads3 pairreads_file po-prod \
+	 trans_qual trimseq_qual
+



View it on GitLab: https://salsa.debian.org/med-team/euler2/commit/18020918f1e2e14b5a0b561f0b8781bcab3789c2

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View it on GitLab: https://salsa.debian.org/med-team/euler2/commit/18020918f1e2e14b5a0b561f0b8781bcab3789c2
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