[med-svn] [Git][med-team/pal2nal][upstream] New upstream version 14.1

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / pal2nal


Commits:
4f7f0eac by Steffen Moeller at 2018-05-10T00:58:29+02:00
New upstream version 14.1
- - - - -


2 changed files:

- README
- pal2nal.pl


Changes:

=====================================
README
=====================================
--- a/README
+++ b/README
@@ -14,8 +14,9 @@
 #               version 12.2       September 9, 2009              #
 #               version 13.0       July 26, 2010                  #
 #               version 14.0       December 2, 2011               #
+#               version 14.1       October 17, 2017               #
 #                                                                 #
-#               Mikita Suyama (mikita at genome.med.kyoto-u.ac.jp)   #
+#               Mikita Suyama (mikita at bioreg.kyushu-u.ac.jp)      #
 #                                                                 #
 #=================================================================#
 
@@ -35,6 +36,9 @@ The resulting codon-based DNA alignment can further be subjected
 to the calculation of synonymous (Ks) and non-synonymous (Ka)
 substitution rates.
 
+The script is licensed under GPL v2.
+
+
 
 #-----------#
 # Reference
@@ -176,7 +180,7 @@ Example:
 
 http://www.bork.embl.de/pal2nal
  or
-http://www.genome.med.kyoto-u.ac.jp/cgi-bin/suyama/pal2nal/index.cgi
+http://www.genome.med.kyoto-u.ac.jp/cgi-bin/suyama/pal2nal/index.cgi  (not working)
 
 
 #---------#
@@ -186,10 +190,10 @@ http://www.genome.med.kyoto-u.ac.jp/cgi-bin/suyama/pal2nal/index.cgi
 If you have any questions or comments, please email me:
 
   Mikita Suyama
-  Center for Genomic Medicine,
-  Graduate School of Medicine, Kyoto University,
-  606-8501 Kyoto, JAPAN
-  tel: +81 75 753 4383
-  fax: +81 75 753 4382
-  email: mikita at genome.med.kyoto-u.ac.jp
+  Medical Institute of Bioregulation
+  Kyushu University,
+  812-8582 Fukuoka, JAPAN
+  tel: +81 92 642 6384
+  fax: +81 92 642 6562
+  email: mikita at bioreg.kyushu-u.ac.jp
 


=====================================
pal2nal.pl
=====================================
--- a/pal2nal.pl
+++ b/pal2nal.pl
@@ -1,6 +1,13 @@
 #!/usr/bin/perl
+#    pal2nal.pl (c) 2017 Mikita Suyama <mikita at bioreg.kyushu-u.ac.jp>
 #
-#    pal2nal.pl  (v14)                                      Mikita Suyama
+#    #----------------------------------------#
+#      This script is licensed under GPL v2.0
+#    #----------------------------------------#
+#
+#
+#
+#    pal2nal.pl  (v14.1)                                      Mikita Suyama
 #
 #    Usage:  pal2nal.pl  pep.aln  nuc.fasta  [nuc.fasta...]  [options]  >  output
 #
@@ -56,6 +63,10 @@
 #            NUC1   GCTTGTGATGAATTTGGTGCTCGTCATG--GGG---TTTTAA
 #            NUC2   GCGGG-GACGACTGG---GCGTAGCAC---GGGGG-TTTTGA
 #    
+#
+#  v14.1
+#     - licensed under GPL v2.0
+#                                                          2017/10/17
 #  v14.
 #     - NCBI GenBank codon table
 #                1  Universal code



View it on GitLab: https://salsa.debian.org/med-team/pal2nal/commit/4f7f0eac281f33e7937dc5cdc402246673c68984

---
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