[med-svn] [Git][med-team/augustus][master] 6 commits: New upstream version 3.3.1+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch master at Debian Med / augustus


Commits:
bd4fde9d by Sascha Steinbiss at 2018-05-11T12:17:33+02:00
New upstream version 3.3.1+dfsg
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be3095a6 by Sascha Steinbiss at 2018-05-11T12:24:07+02:00
Update upstream source from tag 'upstream/3.3.1+dfsg'

Update to upstream version '3.3.1+dfsg'
with Debian dir ee022bfb712cd928d1d33d1064306bdbde5d8687
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fe72fbad by Sascha Steinbiss at 2018-05-15T22:08:03+02:00
add manpage for utrrnaseq

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7e2cd7d6 by Sascha Steinbiss at 2018-05-15T22:10:38+02:00
new upstream release

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ec4239c1 by Sascha Steinbiss at 2018-05-15T22:11:04+02:00
fix typo in manpage

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2c55065c by Sascha Steinbiss at 2018-05-16T00:42:16+02:00
housekeeping

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30 changed files:

- HISTORY.TXT
- Makefile
- README.TXT
- auxprogs/Makefile
- auxprogs/aln2wig/Makefile
- auxprogs/aln2wig/aln2wig.c
- auxprogs/auxBamFilters/README
- auxprogs/auxBamFilters/eg1.s.bam
- auxprogs/auxBamFilters/eg2.bam
- auxprogs/auxBamFilters/operation_H_filter.txt
- auxprogs/auxBamFilters/operation_N_filter.txt
- auxprogs/auxBamFilters/toyAlignments.bam
- auxprogs/bam2wig/Makefile
- auxprogs/bam2wig/README.txt
- auxprogs/checkTargetSortedness/Makefile
- auxprogs/checkTargetSortedness/checkTargetSortedness.c
- auxprogs/compileSpliceCands/Makefile
- auxprogs/compileSpliceCands/chr21.fa
- auxprogs/compileSpliceCands/compileSpliceCands.c
- auxprogs/compileSpliceCands/list.c
- auxprogs/compileSpliceCands/list.h
- auxprogs/compileSpliceCands/out.gff
- auxprogs/filterBam/Makefile
- auxprogs/filterBam/README
- auxprogs/filterBam/src/Makefile
- auxprogs/filterBam/src/bamtools/LICENSE
- auxprogs/filterBam/src/bamtools/bamtools_sort.h
- auxprogs/filterBam/src/bamtools/bamtools_tool.h
- auxprogs/filterBam/src/filterBam.cc
- auxprogs/filterBam/src/functions/MatePairs.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/compare/6bc36f3fdd659eea35d853cc6ff1e04aa294c584...2c55065c2ea5549fc043c30991cf101d15884040

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View it on GitLab: https://salsa.debian.org/med-team/augustus/compare/6bc36f3fdd659eea35d853cc6ff1e04aa294c584...2c55065c2ea5549fc043c30991cf101d15884040
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