[med-svn] [Git][med-team/libucsc][master] Try initial packaging
Andreas Tille
gitlab at salsa.debian.org
Sat May 19 08:30:09 BST 2018
Andreas Tille pushed to branch master at Debian Med / libucsc
Commits:
4494a6b4 by Andreas Tille at 2018-05-19T09:25:34+02:00
Try initial packaging
- - - - -
7 changed files:
- + debian/changelog
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/rules
- + debian/source/format
- + debian/watch
Changes:
=====================================
debian/changelog
=====================================
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+libucsc (0.0+git20180518.91029f67+dfsg-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #xxxxxx)
+
+ -- Andreas Tille <tille at debian.org> Tue, 05 Jul 2016 15:09:25 +0200
=====================================
debian/compat
=====================================
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+11
=====================================
debian/control
=====================================
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,62 @@
+Source: libucsc
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/libucsc
+Vcs-Git: https://salsa.debian.org/med-team/libucsc.git
+Homepage: http://genome.ucsc.edu/
+
+Package: libucsc0
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: library used in ucsc genome browser
+ The UCSC Genome Browser was originally a graphical viewing tool for the
+ human genome assembly. Later a broad collection of vertebrate and model
+ organism assemblies and annotations, along with a large suite of tools
+ for viewing, analyzing and downloading data was included.
+ .
+ While the code for the whole UCSC Genome Browser project is not DFSG
+ free the basic library has a free license. This package provides the
+ free library part of the UCSC Genome Browser which is used in several
+ other free software projects.
+ .
+ This package provides the dynamic library.
+
+Package: libucsc-dev
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: library used in ucsc genome browser (development files)
+ The UCSC Genome Browser was originally a graphical viewing tool for the
+ human genome assembly. Later a broad collection of vertebrate and model
+ organism assemblies and annotations, along with a large suite of tools
+ for viewing, analyzing and downloading data was included.
+ .
+ While the code for the whole UCSC Genome Browser project is not DFSG
+ free the basic library has a free license. This package provides the
+ free library part of the UCSC Genome Browser which is used in several
+ other free software projects.
+ .
+ This package provides the static library and headers.
+
+Package: libucsc-utils
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: library used in ucsc genome browser (assembly of tools)
+ The UCSC Genome Browser was originally a graphical viewing tool for the
+ human genome assembly. Later a broad collection of vertebrate and model
+ organism assemblies and annotations, along with a large suite of tools
+ for viewing, analyzing and downloading data was included.
+ .
+ While the code for the whole UCSC Genome Browser project is not DFSG
+ free the basic library has a free license. This package provides the
+ free library part of the UCSC Genome Browser which is used in several
+ other free software projects.
+ .
+ This package contains some free utilities using the UCSC Genome Browser
+ library.
=====================================
debian/copyright
=====================================
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,230 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ucsc
+Upstream-Contact: Jim Kent <jim_kent at pacbell.net>
+Source: git://genome-source.soe.ucsc.edu/kent.git
+ https://github.com/ucscGenomeBrowser/kent
+Files-Excluded:
+ build
+ confs
+ java
+ python
+ .gitignore
+ LICENSE
+ README
+ src/a*
+ src/b*
+ src/c*
+ src/d*
+ src/f*
+ src/g*
+ src/h*
+ src/idbQuery
+ src/index
+ src/intronerator
+ src/isPcr
+ src/j*
+ src/k*
+ src/m*
+ src/o*
+ src/p*
+ src/r*
+ src/s*
+ src/userApps
+ src/t*
+ src/w*
+ src/x*
+ src/LICENSE
+ src/README
+Comment: The LICENSE file in the root dir says:
+ LICENSE files in subdirectories override the text of this LICENSE file.
+
+Files: *
+Copyright: 2001-2018 Jim Kent <jim_kent at pacbell.net>, UC Regents
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy of
+ this software and associated documentation files (the "Software"), to deal in
+ the Software without restriction, including without limitation the rights to
+ use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+ the Software, and to permit persons to whom the Software is furnished to do so,
+ subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+ FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+ COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+ IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+Files: lib/font/*
+Copyright: 1984-1989, 1994 Adobe Systems Incorporated.,
+ 1988, 1994 Digital Equipment Corporation.
+License: Adobe
+ Adobe is a trademark of Adobe Systems Incorporated which may be
+ registered in certain jurisdictions.
+ Permission to use these trademarks is hereby granted only in
+ association with the images described in this file.
+ .
+ Permission to use, copy, modify, distribute and sell this software
+ and its documentation for any purpose and without fee is hereby
+ granted, provided that the above copyright notices appear in all
+ copies and that both those copyright notices and this permission
+ notice appear in supporting documentation, and that the names of
+ Adobe Systems and Digital Equipment Corporation not be used in
+ advertising or publicity pertaining to distribution of the software
+ without specific, written prior permission. Adobe Systems and
+ Digital Equipment Corporation make no representations about the
+ suitability of this software for any purpose. It is provided "as
+ is" without express or implied warranty.
+Comment:
+ lib/font/README says:
+ -------------------------------------------
+ Most of these files were created from fonts in the xfree package. These were downloaded from the
+ CVS archive at http://www.xfree86.org/cvs/ in the xc/fonts/bdf/100dpi and xc/fonts/bdf/75dpi
+ modules using the bdfToGem format Hiram Clawson wrote. The commands in particular are:
+ .
+ bdfToGem 75dpi/courR12.bdf mgCourier12.c -name=Courier12
+ bdfToGem 75dpi/courR18.bdf mgCourier18.c -name=Courier18
+ bdfToGem 75dpi/courR24.bdf mgCourier24.c -name=Courier24
+ bdfToGem 75dpi/helvR08.bdf mgHelvetica8.c -name=Helvetica8
+ bdfToGem 75dpi/helvR12.bdf mgHelvetica12.c -name=Helvetica12
+ bdfToGem 75dpi/helvR14.bdf mgHelvetica14.c -name=Helvetica14
+ bdfToGem 75dpi/helvR18.bdf mgHelvetica18.c -name=Helvetica18
+ bdfToGem 75dpi/helvR24.bdf mgHelvetica24.c -name=Helvetica24
+ bdfToGem 75dpi/timR08.bdf mgTimes8.c -name=Times8
+ bdfToGem 75dpi/timR12.bdf mgTimes12.c -name=Times12
+ bdfToGem 75dpi/timR14.bdf mgTimes14.c -name=Times14
+ bdfToGem 75dpi/timR18.bdf mgTimes18.c -name=Times18
+ bdfToGem 75dpi/timR24.bdf mgTimes24.c -name=Times24
+ bdfToGem 100dpi/courR24.bdf mgCourier34.c -name=Courier34
+ bdfToGem 100dpi/helvR24.bdf mgHelvetica34.c -name=Helvetica34
+ bdfToGem 100dpi/helvB24.bdf mgHelveticaBold34.c -name=HelveticaBold34
+ bdfToGem 100dpi/timR24.bdf mgTimes34.c -name=Times34
+ --------------------------------------------
+ .
+ The license statement above was verified at
+ http://cvsweb.xfree86.org/cvsweb/xc/fonts/bdf/100dpi/courR24.bdf?rev=1.3&content-type=text/vnd.viewcvs-markup
+
+Files: lib/font/mgSail8.c
+Copyright: 2011 LatinoType Limitada <luciano at latinotype.com>
+License: SILOpenFontLicense
+ PREAMBLE
+ .
+ The goals of the Open Font License (OFL) are to stimulate worldwide
+ development of collaborative font projects, to support the font creation
+ efforts of academic and linguistic communities, and to provide a free
+ and open framework in which fonts may be shared and improved in
+ partnership with others.
+ .
+ The OFL allows the licensed fonts to be used, studied, modified and
+ redistributed freely as long as they are not sold by themselves. The
+ fonts, including any derivative works, can be bundled, embedded,
+ redistributed and/or sold with any software provided that any reserved
+ names are not used by derivative works. The fonts and derivatives,
+ however, cannot be released under any other type of license. The
+ requirement for fonts to remain under this license does not apply to any
+ document created using the fonts or their derivatives.
+ .
+ DEFINITIONS
+ .
+ “Font Software” refers to the set of files released by the Copyright
+ Holder(s) under this license and clearly marked as such. This may
+ include source files, build scripts and documentation.
+ .
+ “Reserved Font Name” refers to any names specified as such after the
+ copyright statement(s).
+ .
+ “Original Version” refers to the collection of Font Software components
+ as distributed by the Copyright Holder(s).
+ .
+ “Modified Version” refers to any derivative made by adding to,
+ deleting, or substituting—in part or in whole—any of the components of
+ the Original Version, by changing formats or by porting the Font
+ Software to a new environment.
+ .
+ “Author” refers to any designer, engineer, programmer, technical writer
+ or other person who contributed to the Font Software.
+ .
+ PERMISSION & CONDITIONS
+ .
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of the Font Software, to use, study, copy, merge, embed, modify,
+ redistribute, and sell modified and unmodified copies of the Font
+ Software, subject to the following conditions:
+ .
+ 1) Neither the Font Software nor any of its individual components, in
+ Original or Modified Versions, may be sold by itself.
+ .
+ 2) Original or Modified Versions of the Font Software may be bundled,
+ redistributed and/or sold with any software, provided that each copy
+ contains the above copyright notice and this license. These can be
+ included either as stand-alone text files, human-readable headers or in
+ the appropriate machine-readable metadata fields within text or binary
+ files as long as those fields can be easily viewed by the user.
+ .
+ 3) No Modified Version of the Font Software may use the Reserved Font
+ Name(s) unless explicit written permission is granted by the
+ corresponding Copyright Holder. This restriction only applies to the
+ primary font name as presented to the users.
+ .
+ 4) The name(s) of the Copyright Holder(s) or the Author(s) of the Font
+ Software shall not be used to promote, endorse or advertise any Modified
+ Version, except to acknowledge the contribution(s) of the Copyright
+ Holder(s) and the Author(s) or with their explicit written permission.
+ .
+ 5) The Font Software, modified or unmodified, in part or in whole,
+ must be distributed entirely under this license, and must not be
+ distributed under any other license. The requirement for fonts to remain
+ under this license does not apply to any document created using the Font
+ Software.
+ .
+ TERMINATION
+ .
+ This license becomes null and void if any of the above conditions are
+ not met.
+ .
+ DISCLAIMER
+ .
+ THE FONT SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF
+ COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL THE
+ COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+ INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL
+ DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER
+ DEALINGS IN THE FONT SOFTWARE. Webfont Kit
+ .
+ The license for this font is the SIL OFL license. This license does not
+ allow us to redistribute derivative versions of the font without
+ wholesale name changes inside and out of the font. Until we figure out a
+ reasonable method of delivering these to you and complying with the
+ license, you will have to use the Webfont Generator yourself on these,
+ renaming the fonts appropriately. Source: from other sources now lost
+ in the midsts of time
+Comment: lib/font/README says:
+ Two additional fonts - sail and sixhi - were from other sources now lost
+ in the midsts of time.
+ .
+ According to some websearch this
+ http://www.fontsquirrel.com/fonts/sail
+ is most probably the source of the sail font
+
+Files: lib/font/mgSixhi6.c
+Copyright: unknown
+License: unknown
+ lib/font/README says:
+ .
+ Two additional fonts - sail and sixhi - were from other sources now lost
+ in the midsts of time.
+Comment: Websearch to find back what was lost was not successful. It
+ can be assumed thst this single file can be distributed and the package
+ is non-free anyway.
+
+Files: debian/*
+Copyright: 2014-2018 Andreas Tille <tille at debian.org>
+License: Apache-2.0
+ You can find the full text of Apache-2.0 license at
+ /usr/share/common-licenses/Apache-2.0.
=====================================
debian/rules
=====================================
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,22 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+include /usr/share/dpkg/default.mk
+# this provides:
+# DEB_SOURCE: the source package name
+# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
+# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
+# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
+# DEB_VERSION_UPSTREAM: the package's upstream version
+# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
+
+# for hardening you might like to uncomment this:
+# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+ dh $@
+
+#get-orig-source:
+# . debian/get-orig-source
=====================================
debian/source/format
=====================================
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
=====================================
debian/watch
=====================================
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,7 @@
+version=4
+
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz,mode=git,pretty=0.0+git%cd.%h" \
+ https://github.com/ucscGenomeBrowser/kent HEAD
+
+# Clone on Github has https
+# git://genome-source.soe.ucsc.edu/kent.git HEAD
View it on GitLab: https://salsa.debian.org/med-team/libucsc/commit/4494a6b4530db2072bcc5894ba9ab8ca22559aab
---
View it on GitLab: https://salsa.debian.org/med-team/libucsc/commit/4494a6b4530db2072bcc5894ba9ab8ca22559aab
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180519/75c44cd6/attachment-0001.html>
More information about the debian-med-commit
mailing list