[med-svn] [Git][med-team/bedtools][master] Autopkgtest: fixed outdated run-unit-test

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / bedtools


Commits:
75ec9125 by Liubov Chuprikova at 2018-05-22T17:14:48+00:00
Autopkgtest: fixed outdated run-unit-test

- - - - -


2 changed files:

- debian/changelog
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,14 @@
 bedtools (2.27.1+dfsg-2) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Install autopkgtest script as /usr/share/doc/bedtools/run-unit-test
   * Point Vcs fields to salsa.debian.org
 
+  [ Liubov Chuprikova ]
+  * Fix "autopkgtest fails while it succeeded in the past"
+    updated run-unit-test to match new upstream tests
+    Closes: #894781
+
  -- Andreas Tille <tille at debian.org>  Thu, 05 Apr 2018 09:00:44 +0200
 
 bedtools (2.27.1+dfsg-1) unstable; urgency=medium


=====================================
debian/tests/run-unit-test
=====================================
--- a/debian/tests/run-unit-test
+++ b/debian/tests/run-unit-test
@@ -5,7 +5,6 @@ if [ "$ADTTMP" = "" ] ; then
   trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
 fi
 
-set -x
 # Copy test suite there
 cp -a /usr/share/bedtools/test $ADTTMP
 
@@ -16,14 +15,5 @@ ln -s /usr/share/bedtools/genomes
 
 # Enter the directory and run the tests
 cd $ADTTMP/test
-# Test script is seeking for lower case dir
-if [ -d groupBy ] ; then
-  ln -s groupBy groupby
-fi
-DATA=/usr/share/bedtools/data BT=/usr/bin/bedtools sh test.sh | tee test.sh.output
-
-# Did it fail ?
-TESTFAILED=0
-grep -q fail test.sh.output && TESTFAILED=1
+DATA=/usr/share/bedtools/data BT=/usr/bin/bedtools sh test.sh
 
-exit $TESTFAILED



View it on GitLab: https://salsa.debian.org/med-team/bedtools/commit/75ec9125738229c886da4f93cf90a59fd6daa10d

---
View it on GitLab: https://salsa.debian.org/med-team/bedtools/commit/75ec9125738229c886da4f93cf90a59fd6daa10d
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