[med-svn] [Git][med-team/primer3][master] Skip tests that fail on big endian

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / primer3


Commits:
51b3d817 by Liubov Chuprikova at 2018-05-28T15:09:35+00:00
Skip tests that fail on big endian

- - - - -


3 changed files:

- + debian/README.source
- debian/changelog
- debian/rules


Changes:

=====================================
debian/README.source
=====================================
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,4 @@
+The tests included in the sources of Primer3 are run during the building
+process. However, some tests are skipped for big-endian architectures because
+they are trying to use binary test files in the kmer_lists directory that
+were generated on a little-endian architecture.


=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+primer3 (2.4.0-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Skip tests that fail on big endian
+    Closes: #890993
+  * Added d/README.source with explanation why some tests are skipped
+
+ -- Liubov Chuprikova <chuprikovalv at gmail.com>  Mon, 28 May 2018 13:44:30 +0000
+
 primer3 (2.4.0-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -6,6 +6,11 @@ include /usr/share/dpkg/default.mk
 
 sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples
 
+BUILDARCH:=$(shell dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)
+
+FAILED_TESTS:='primer_masker' \
+	      'primer_masker_formatted'
+
 %:
 	dh $@ --sourcedirectory=src
 
@@ -13,7 +18,17 @@ override_dh_auto_build:
 	dh_auto_build -- 'CPP=$$(CXX)'
 
 override_dh_auto_test:
+ifneq ($(BUILDARCH),little)
+	cp -a test/p3test.pl test/p3test.pl~
+	# exclude tests known to fail on big endian
+	# See README.source for further explanation.
+	for tst in $(FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ; done
+endif
 	dh_auto_test --sourcedirectory=test
+ifneq ($(BUILDARCH),little)
+	# restore original test file
+	mv test/p3test.pl~ test/p3test.pl
+endif
 	dh clean --sourcedirectory=test
 
 



View it on GitLab: https://salsa.debian.org/med-team/primer3/commit/51b3d817e5b4e7a2dd5d0082cf4cb593e7952216

-- 
View it on GitLab: https://salsa.debian.org/med-team/primer3/commit/51b3d817e5b4e7a2dd5d0082cf4cb593e7952216
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