[med-svn] [Git][med-team/paleomix][upstream] New upstream version 1.2.13.2

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / paleomix


Commits:
b69c70cd by Andreas Tille at 2018-05-03T12:13:41+02:00
New upstream version 1.2.13.2
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30 changed files:

- CHANGES.md
- MANIFEST.in
- README.rst
- bin/bam_pipeline
- bin/bam_rmdup_collapsed
- bin/conv_gtf_to_bed
- bin/paleomix
- bin/phylo_pipeline
- bin/trim_pipeline
- docs/bam_pipeline/filestructure.rst
- docs/conf.py
- docs/index.rst
- misc/setup_bam_pipeline_example.sh
- misc/setup_phylo_pipeline_example.sh
- misc/skeleton.py
- misc/synthesize_reads.py
- paleomix/__init__.py
- paleomix/atomiccmd/__init__.py
- paleomix/atomiccmd/builder.py
- paleomix/atomiccmd/command.py
- paleomix/atomiccmd/pprint.py
- paleomix/atomiccmd/sets.py
- paleomix/common/__init__.py
- paleomix/common/bamfiles.py
- paleomix/common/bedtools.py
- paleomix/common/console.py
- paleomix/common/fileutils.py
- paleomix/common/formats/__init__.py
- paleomix/common/formats/_common.py
- paleomix/common/formats/_graph.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/paleomix/commit/b69c70cd5d63a0a22b89c6888e7dc524495b2f92

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