[med-svn] [Git][med-team/genometester][master] Initial packaging

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / genometester


Commits:
c48da61f by Andreas Tille at 2018-05-29T16:16:26+02:00
Initial packaging

- - - - -


8 changed files:

- + debian/changelog
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/rules
- + debian/source/format
- + debian/upstream/metadata
- + debian/watch


Changes:

=====================================
debian/changelog
=====================================
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+genometester (4.0-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 29 May 2018 16:15:40 +0200


=====================================
debian/compat
=====================================
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+11


=====================================
debian/control
=====================================
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: genometester
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/genometester
+Vcs-Git: https://salsa.debian.org/med-team/genometester.git
+Homepage: https://github.com/bioinfo-ut/GenomeTester4
+
+Package: genometester
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: toolkit for performing set operations on k-mer lists
+ Toolkit for performing set operations - union, intersection and
+ complement - on k-mer lists.
+ .
+ GenomeTester4 toolkit, which contains a novel tool GListCompare for
+ performing union, intersection and complement (difference) set
+ operations on k-mer lists. It contains examples of how these
+ general operations can be combined to solve a variety of biological
+ analysis tasks.


=====================================
debian/copyright
=====================================
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,16 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: <pkg>
+Source: <path_to_download>
+Comment: **** Before manually editing this file you should give ****
+           scan-copyrights
+         **** available in cme + lib-config-model-dpkg-perl     ****
+         **** package a try.  For existing copyright files try  ****
+           cme update dpkg-copyright
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2018 maintainername <maintainer at e.mail>
+License: <license>


=====================================
debian/rules
=====================================
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,19 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+include /usr/share/dpkg/default.mk
+# this provides:
+# DEB_SOURCE: the source package name
+# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
+# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
+# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
+# DEB_VERSION_UPSTREAM: the package's upstream version
+# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
+
+# for hardening you might like to uncomment this:
+# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+	dh $@


=====================================
debian/source/format
=====================================
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)


=====================================
debian/upstream/metadata
=====================================
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+  Author: Lauris Kaplinski and Maarja Lepamets and Maido Remm
+  Title: "GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists"
+  Journal: GigaScience
+  Year: 2015
+  Volume: 4
+  Number: 1
+  Pages: 58
+  DOI: 10.1186/s13742-015-0097-y
+  PMID: 26640690
+  URL: https://academic.oup.com/gigascience/article/4/1/1/2707786
+  eprint: https://academic.oup.com/gigascience/article-pdf/4/1/1/10894573/13742_2015_Article_97.pdf


=====================================
debian/watch
=====================================
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=4
+
+opts="uversionmangle=s/_/./g" \
+  https://github.com/bioinfo-ut/GenomeTester4/releases .*/archive/Version_(\d[_.\d]+)@ARCHIVE_EXT@



View it on GitLab: https://salsa.debian.org/med-team/genometester/commit/c48da61fcf5ead4c3c8fc6d42a2a1b3fa8e4b2a9

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View it on GitLab: https://salsa.debian.org/med-team/genometester/commit/c48da61fcf5ead4c3c8fc6d42a2a1b3fa8e4b2a9
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