[med-svn] [Git][med-team/genometester][upstream] New upstream version 4.0+git20180508.a9c14a6+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / genometester


Commits:
edc46387 by Andreas Tille at 2018-10-06T09:50:09Z
New upstream version 4.0+git20180508.a9c14a6+dfsg
- - - - -


7 changed files:

- − bin/glistcompare
- − bin/glistmaker
- − bin/glistquery
- − bin/gmer_caller
- − bin/gmer_counter
- src/Makefile
- src/gdistribution.c


Changes:

=====================================
bin/glistcompare deleted
=====================================
Binary files a/bin/glistcompare and /dev/null differ


=====================================
bin/glistmaker deleted
=====================================
Binary files a/bin/glistmaker and /dev/null differ


=====================================
bin/glistquery deleted
=====================================
Binary files a/bin/glistquery and /dev/null differ


=====================================
bin/gmer_caller deleted
=====================================
Binary files a/bin/gmer_caller and /dev/null differ


=====================================
bin/gmer_counter deleted
=====================================
Binary files a/bin/gmer_counter and /dev/null differ


=====================================
src/Makefile
=====================================
@@ -8,9 +8,9 @@ CXX  = gcc
 LISTMAKER_SOURCES = \
 	glistmaker.c \
 	common.c common.h \
+	fasta.c fasta.h \
 	wordtable.c wordtable.h \
 	wordmap.c wordmap.h \
-	fasta.c fasta.h \
 	buffer.c buffer.h \
 	sequence.c sequence.h \
 	sequence-file.c sequence-file.h \
@@ -54,6 +54,18 @@ LISTCOMPARE_SOURCES = \
 	queue.c queue.h \
 	utils.c
 
+GDISTRIBUTION_SOURCES = \
+	gdistribution.c \
+	wordtable.c \
+	wordmap.c \
+	fasta.c \
+	buffer.c \
+	sequence.c \
+	sequence-file.c sequence-file.h \
+	common.c \
+	queue.c queue.h \
+	utils.c
+
 GMER_COUNTER_SOURCES = \
 	gmer_counter.c \
 	index.c index.h \
@@ -134,6 +146,9 @@ glistquery: $(LISTQUERY_SOURCES)
 glistcompare: $(LISTCOMPARE_SOURCES)
 	$(CXX) $(LISTCOMPARE_SOURCES) -o glistcompare $(LIBS) $(CXXFLAGS)
 
+gdistribution: $(GDISTRIBUTION_SOURCES)
+	$(CXX) $(GDISTRIBUTION_SOURCES) -o gdistribution $(LIBS) $(CXXFLAGS)
+
 gmer_counter: $(GMER_COUNTER_SOURCES)
 	$(CXX) $(GMER_COUNTER_SOURCES) -o gmer_counter $(LIBS) $(CXXFLAGS) -Wall
 


=====================================
src/gdistribution.c
=====================================
@@ -40,7 +40,7 @@ typedef struct {
   unsigned int count;
 } Freq;
 
-static void get_distribution (wordmap *maps[2]);
+static void get_distribution (GT4WordMap *maps[2]);
 
 static void
 print_usage (FILE *ofs) {
@@ -51,7 +51,7 @@ int
 main (int argc, const char *argv[])
 {
   const char *names[2];
-  wordmap *maps[2];
+  GT4WordMap *maps[2];
   Freq *freqs;
   
   if (argc < 3) {
@@ -64,8 +64,8 @@ main (int argc, const char *argv[])
 
   if (debug) fprintf (stderr, "%s %s\n", names[0], names[1]);
   
-  maps[0] = wordmap_new (names[0], 1);
-  maps[1] = wordmap_new (names[1], 1);
+  maps[0] = gt4_wordmap_new (names[0], 1);
+  maps[1] = gt4_wordmap_new (names[1], 1);
   
   get_distribution (maps);
   
@@ -79,7 +79,7 @@ static int compare (const void *lhs, const void *rhs) {
 }
 
 static void
-get_distribution (wordmap *maps[2])
+get_distribution (GT4WordMap *maps[2])
 {
   unsigned long long size, i0, i1, fidx;
   unsigned int j, count;



View it on GitLab: https://salsa.debian.org/med-team/genometester/commit/edc463873f394bf0fd94995b952de5aa33310d6a

-- 
View it on GitLab: https://salsa.debian.org/med-team/genometester/commit/edc463873f394bf0fd94995b952de5aa33310d6a
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