[med-svn] [Git][med-team/snp-sites][upstream] New upstream version 2.4.1

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / snp-sites


Commits:
8f060bf0 by Sascha Steinbiss at 2018-10-06T15:54:42Z
New upstream version 2.4.1
- - - - -


5 changed files:

- .gitignore
- Dockerfile
- README.md
- VERSION
- + _config.yml


Changes:

=====================================
.gitignore
=====================================
@@ -33,3 +33,6 @@ run-all-tests*
 src/snp-sites
 tests/.deps/*
 tests/.dirstamp
+# vagrant runtime stuff
+.vagrant
+ubuntu-*-cloudimg-console.log


=====================================
Dockerfile
=====================================
@@ -6,7 +6,7 @@ FROM debian:testing
 #
 #  Authorship
 #
-MAINTAINER ap13 at sanger.ac.uk
+MAINTAINER path-help at sanger.ac.uk
 
 #
 # Pull in packages from testing
@@ -14,6 +14,6 @@ MAINTAINER ap13 at sanger.ac.uk
 RUN apt-get update -qq
 
 #
-# Install Roary
+# Install SNP-sites
 #
-RUN apt-get install snp-sites
+RUN apt-get -y install snp-sites


=====================================
README.md
=====================================
@@ -1,9 +1,14 @@
 # SNP-sites
 Rapidly extracts SNPs from a multi-FASTA alignment.
 
-[![Build Status](https://travis-ci.org/sanger-pathogens/snp-sites.png?branch=master)](https://travis-ci.org/sanger-pathogens/snp-sites)
-[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-brightgreen.svg)](https://github.com/sanger-pathogens/snp-sites/blob/master/LICENSE)
-[![status](https://img.shields.io/badge/MGEN-10.1099%2Fmgen.0.000056-brightgreen.svg)](http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000056)
+[![Build Status](https://travis-ci.org/sanger-pathogens/snp-sites.png?branch=master)](https://travis-ci.org/sanger-pathogens/snp-sites)   
+[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-brightgreen.svg)](https://github.com/sanger-pathogens/snp-sites/blob/master/LICENSE)   
+[![status](https://img.shields.io/badge/MGEN-10.1099%2Fmgen.0.000056-brightgreen.svg)](http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000056)   
+[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg)](http://bioconda.github.io/recipes/gubbins/README.html)  
+[![Container ready](https://img.shields.io/badge/container-ready-brightgreen.svg)](https://quay.io/repository/biocontainers/gubbins)  
+[![Docker Build Status](https://img.shields.io/docker/build/sangerpathogens/gubbins.svg)](https://hub.docker.com/r/sangerpathogens/gubbins)  
+[![Docker Pulls](https://img.shields.io/docker/pulls/sangerpathogens/gubbins.svg)](https://hub.docker.com/r/sangerpathogens/gubbins)  
+
 
 ## Contents
 * [Introduction](#introduction)


=====================================
VERSION
=====================================
@@ -1 +1 @@
-2.4.0
+2.4.1


=====================================
_config.yml
=====================================
@@ -0,0 +1 @@
+theme: jekyll-theme-cayman
\ No newline at end of file



View it on GitLab: https://salsa.debian.org/med-team/snp-sites/commit/8f060bf0c1aa1b491f447c6b707bf57dc81796e3

-- 
View it on GitLab: https://salsa.debian.org/med-team/snp-sites/commit/8f060bf0c1aa1b491f447c6b707bf57dc81796e3
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