[med-svn] [Git][med-team/fast5][master] 5 commits: Point Vcs fields to salsa.debian.org

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / fast5


Commits:
1e0e2d34 by Andreas Tille at 2018-10-09T12:17:41Z
Point Vcs fields to salsa.debian.org

- - - - -
763bc6ba by Andreas Tille at 2018-10-09T12:17:41Z
Standards-Version: 4.2.1

- - - - -
ada6664c by Andreas Tille at 2018-10-09T12:32:14Z
Do not install example binaries to enable reproducible builds

- - - - -
46824048 by Andreas Tille at 2018-10-09T12:34:24Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test

- - - - -
35b02bcb by Andreas Tille at 2018-10-09T12:40:19Z
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/libfast5-dev.examples
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+fast5 (0.6.5-2) unstable; urgency=medium
+
+  * Team upload.
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Do not install example binaries to enable reproducible builds
+    (thanks for the patch to Chris Lamb <lamby at debian.org>)
+    Closes: #910655
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test
+
+ -- Andreas Tille <tille at debian.org>  Tue, 09 Oct 2018 14:34:41 +0200
+
 fast5 (0.6.5-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -1,30 +1,28 @@
 Source: fast5
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif at debian.org>
-Build-Depends:
-	debhelper (>= 11),
-	dh-python,
-	libhdf5-dev,
-	libboost-python-dev,
-	python-all-dev,
-	python-setuptools,
-	python3-all-dev,
-	python3-setuptools,
-	cython,
-	cython3
-Standards-Version: 4.1.3
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11),
+               dh-python,
+               libhdf5-dev,
+               libboost-python-dev,
+               python-all-dev,
+               python-setuptools,
+               python3-all-dev,
+               python3-setuptools,
+               cython,
+               cython3
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/fast5
+Vcs-Git: https://salsa.debian.org/med-team/fast5.git
 Homepage: https://github.com/mateidavid/fast5
-Vcs-Git: https://anonscm.debian.org/git/debian-med/fast5.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fast5.git
 
 Package: fast5
 Architecture: all
-Depends:
-	${misc:Depends},
-	${python3:Depends},
-	python3-fast5 (>= ${source:Version}),
+Depends: ${misc:Depends},
+         ${python3:Depends},
+         python3-fast5 (>= ${source:Version})
 Description: utilities for manipulating Oxford Nanopore Fast5 files
  The data produced by Oxford Nanopore Technologies (ONT) sequencers
  are stored in fast5 files, based on the HDF5 file format, with one
@@ -32,11 +30,10 @@ Description: utilities for manipulating Oxford Nanopore Fast5 files
  these files, as well as to pack them for more effficient use.
 
 Package: libfast5-dev
-Section: libdevel
 Architecture: all
-Depends:
-	${misc:Depends},
-	libhdf5-dev | libhdf5-mpich-dev | libhdf5-openmpi-dev,
+Section: libdevel
+Depends: ${misc:Depends},
+         libhdf5-dev | libhdf5-mpich-dev | libhdf5-openmpi-dev
 Description: library for reading Oxford Nanopore Fast5 files -- headers
  A lightweight C++11 library to read raw signal data from Oxford
  Nanopore's FAST5 files.
@@ -44,12 +41,11 @@ Description: library for reading Oxford Nanopore Fast5 files -- headers
  This package provides the header files for development with fast5.
 
 Package: python-fast5
-Section: python
 Architecture: any
-Depends:
-	${shlibs:Depends},
-	${misc:Depends},
-	${python:Depends},
+Section: python
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${python:Depends}
 Description: library for reading Oxford Nanopore Fast5 files -- Python 2
  A lightweight C++11 library to read raw signal data from Oxford
  Nanopore's FAST5 files.
@@ -57,12 +53,11 @@ Description: library for reading Oxford Nanopore Fast5 files -- Python 2
  This package provides the Python 2 library
 
 Package: python3-fast5
-Section: python
 Architecture: any
-Depends:
-	${shlibs:Depends},
-	${misc:Depends},
-	${python3:Depends},
+Section: python
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${python3:Depends}
 Description: library for reading Oxford Nanopore Fast5 files -- Python 3
  A lightweight C++11 library to read raw signal data from Oxford
  Nanopore's FAST5 files.


=====================================
debian/libfast5-dev.examples
=====================================
@@ -1 +1,3 @@
-src/*
+src/*.hpp
+src/*.cpp
+src/Makefile


=====================================
debian/rules
=====================================
@@ -19,7 +19,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 	--sourcedirectory=python
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	cd src && $(MAKE)
+endif
 
 override_dh_auto_clean: clean-examples
 	dh_auto_clean



View it on GitLab: https://salsa.debian.org/med-team/fast5/compare/6308fbfde60c51c3608ad262956fa55871afd48f...35b02bcb376fd7337a59f5aea0f5d3fc12ae2cee

-- 
View it on GitLab: https://salsa.debian.org/med-team/fast5/compare/6308fbfde60c51c3608ad262956fa55871afd48f...35b02bcb376fd7337a59f5aea0f5d3fc12ae2cee
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