[med-svn] [Git][med-team/spoa][master] 5 commits: Fix symbols file

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / spoa


Commits:
5805c3ed by Andreas Tille at 2018-10-19T05:52:38Z
Fix symbols file

- - - - -
4e22c0f3 by Andreas Tille at 2018-10-19T05:53:30Z
Standards-Version: 4.2.1

- - - - -
f9d112d5 by Andreas Tille at 2018-10-19T07:02:03Z
Add build-time test

- - - - -
b8e6b910 by Andreas Tille at 2018-10-19T07:04:22Z
Add autopkgtest

- - - - -
db0c004d by Andreas Tille at 2018-10-19T07:09:35Z
Fix test and upload to unstable

- - - - -


9 changed files:

- + debian/README.test
- debian/changelog
- debian/control
- debian/libspoa1.1.3.symbols
- debian/rules
- + debian/spoa.docs
- + debian/spoa.examples
- + debian/tests/control
- + debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+spoa (1.1.3-2) unstable; urgency=medium
+
+  * Fix symbols file
+    Closes: #905387
+  * Standards-Version: 4.2.1
+  * Add build-time test
+  * Add autopkgtest
+
+ -- Andreas Tille <tille at debian.org>  Fri, 19 Oct 2018 09:04:34 +0200
+
 spoa (1.1.3-1) unstable; urgency=medium
 
   * Initial release (Closes: #901145)


=====================================
debian/control
=====================================
@@ -9,8 +9,8 @@ Build-Depends: debhelper (>= 11~),
                rename,
                libbioparser-dev,
                libgtest-dev,
-               zlib1g-dev (>= 1.2.11~)
-Standards-Version: 4.1.4
+               zlib1g-dev
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/spoa
 Vcs-Git: https://salsa.debian.org/med-team/spoa.git
 Homepage: https://github.com/rvaser/spoa


=====================================
debian/libspoa1.1.3.symbols
=====================================
@@ -66,8 +66,7 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER#
  _ZNK4spoa5Graph23is_topologically_sortedEv at Base 1.1.3
  _ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE at Base 1.1.3
  _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE at Base 1.1.3
- _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE at Base 1.1.3
- _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm at Base 1.1.3
+ _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm at Base 1.1.3
  _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm at Base 1.1.3
  _ZNSt11_Deque_baseIjSaIjEED1Ev at Base 1.1.3
  _ZNSt11_Deque_baseIjSaIjEED2Ev at Base 1.1.3
@@ -89,6 +88,7 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER#
  _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_ at Base 1.1.3
  _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_ at Base 1.1.3
  _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_ at Base 1.1.3
+ _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.3
  _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb at Base 1.1.3
  _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi at Base 1.1.3
  _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_ at Base 1.1.3


=====================================
debian/rules
=====================================
@@ -24,3 +24,9 @@ override_dh_install:
 		    --movedev debian/tmp/usr/include/* usr/include \
 		    --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/$(DEB_HOST_MULTIARCH) \
 		    debian/tmp/usr/lib/*/*.so
+
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	`find . -name spoa_test`
+	`find . -name spoa | grep bin` test/data/sample.fastq
+endif


=====================================
debian/spoa.docs
=====================================
@@ -0,0 +1 @@
+debian/tests/run-unit-test


=====================================
debian/spoa.examples
=====================================
@@ -0,0 +1 @@
+test/data/*


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,17 @@
+#!/bin/bash
+set -e
+
+pkg=spoa
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+
+gunzip -r *
+
+spoa sample.fastq



View it on GitLab: https://salsa.debian.org/med-team/spoa/compare/dcddfa283249108cc9eca21661f710e6733dd10e...db0c004d249cee1863a40d572ea52a705a14ee12

-- 
View it on GitLab: https://salsa.debian.org/med-team/spoa/compare/dcddfa283249108cc9eca21661f710e6733dd10e...db0c004d249cee1863a40d572ea52a705a14ee12
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