[med-svn] [Git][med-team/python-pyfaidx][upstream] New upstream version 0.5.5.1
Andreas Tille
gitlab at salsa.debian.org
Thu Oct 25 19:41:43 BST 2018
Andreas Tille pushed to branch upstream at Debian Med / python-pyfaidx
Commits:
d7f40c07 by Andreas Tille at 2018-10-25T18:30:13Z
New upstream version 0.5.5.1
- - - - -
7 changed files:
- .travis.yml
- README.rst
- pyfaidx/__init__.py
- pyfaidx/cli.py
- + tests/data/issue_141.fasta
- tests/test_faidx.py
- tests/test_feature_indexing.py
Changes:
=====================================
.travis.yml
=====================================
@@ -11,8 +11,9 @@ python:
- 'pypy'
- 'pypy3'
install:
- - pip wheel -f wheelhouse coverage biopython cython pysam pyvcf numpy || true
- - pip install -f wheelhouse biopython cython pysam pyfasta coverage pyvcf numpy || true
+ - pip wheel -f wheelhouse cython pysam numpy || true
+ - pip install -f wheelhouse cython pysam pyfasta coverage pyvcf numpy || true
+ - pip install -f wheelhouse -e git+https://github.com/biopython/biopython.git#egg=biopython || true
- python setup.py install
- if [ ! -f samtools-1.2 ]; then curl -sL https://github.com/samtools/samtools/releases/download/1.2/samtools-1.2.tar.bz2 | tar -xjv; fi
- cd samtools-1.2
=====================================
README.rst
=====================================
@@ -367,7 +367,7 @@ cli script: faidx
-x, --split-files write each region to a separate file (names are derived from regions)
-l, --lazy fill in --default-seq for missing ranges. default: False
-s DEFAULT_SEQ, --default-seq DEFAULT_SEQ
- default base for missing positions and masking. default: N
+ default base for missing positions and masking. default: None
-d DELIMITER, --delimiter DELIMITER
delimiter for splitting names to multiple values (duplicate names will be discarded). default: None
-e HEADER_FUNCTION, --header-function HEADER_FUNCTION
=====================================
pyfaidx/__init__.py
=====================================
@@ -25,7 +25,7 @@ if sys.version_info > (3, ):
dna_bases = re.compile(r'([ACTGNactgnYRWSKMDVHBXyrwskmdvhbx]+)')
-__version__ = '0.5.4'
+__version__ = '0.5.5.1'
class KeyFunctionError(ValueError):
@@ -335,9 +335,13 @@ class Faidx(object):
# Only try to import Bio if we actually need the bgzf reader.
try:
from Bio import bgzf
+ from Bio import __version__ as bgzf_version
+ from distutils.version import LooseVersion
+ if LooseVersion(bgzf_version) < LooseVersion('1.73'):
+ raise ImportError
except ImportError:
raise ImportError(
- "BioPython must be installed to read gzipped files.")
+ "BioPython >= 1.73 must be installed to read block gzip files.")
else:
self._fasta_opener = bgzf.open
self._bgzf = True
@@ -499,7 +503,7 @@ class Faidx(object):
def build_index(self):
try:
- with self._fasta_opener(self.filename, 'r') as fastafile:
+ with self._fasta_opener(self.filename, 'rb') as fastafile:
with open(self.indexname, 'w') as indexfile:
rname = None # reference sequence name
offset = 0 # binary offset of end of current line
@@ -508,10 +512,11 @@ class Faidx(object):
clen = None # character line length
bad_lines = [] # lines > || < than blen
thisoffset = offset
-
+ valid_entry = False
lastline = None
for i, line in enumerate(fastafile):
line_blen = len(line)
+ line = line.decode()
line_clen = len(line.rstrip('\n\r'))
lastline = i
# write an index line
@@ -556,6 +561,12 @@ class Faidx(object):
bad_lines.append((i, line_blen))
offset += line_blen
rlen += line_clen
+
+ # check that we find at least 1 valid FASTA record
+ if not valid_entry:
+ raise FastaIndexingError(
+ "The FASTA file %s does not contain a valid sequence. "
+ "Check that sequence definition lines start with '>'." % self.filename)
# write the final index line, if there is one.
if lastline is not None:
@@ -667,7 +678,7 @@ class Faidx(object):
seq = ''
if not internals:
- return seq.replace('\n', '')
+ return seq.replace('\n', '').replace('\r', '')
else:
return (seq, locals())
@@ -709,14 +720,20 @@ class Faidx(object):
)
elif len(seq) == len(file_seq) - internals['newlines_inside']:
line_len = internals['i'].lenc
+ if '\r\n' in file_seq:
+ newline_char = '\r\n'
+ elif '\r' in file_seq:
+ newline_char = '\r'
+ else:
+ newline_char = '\n'
self.file.seek(internals['bstart'])
if internals['newlines_inside'] == 0:
self.file.write(seq.encode())
elif internals['newlines_inside'] > 0:
n = 0
- m = file_seq.index('\n')
+ m = file_seq.index(newline_char)
while m < len(seq):
- self.file.write(''.join([seq[n:m], '\n']).encode())
+ self.file.write(''.join([seq[n:m], newline_char]).encode())
n = m
m += line_len
self.file.write(seq[n:].encode())
=====================================
pyfaidx/cli.py
=====================================
@@ -12,17 +12,17 @@ def write_sequence(args):
_, ext = os.path.splitext(args.fasta)
if ext:
ext = ext[1:] # remove the dot from extension
+
filt_function = re.compile(args.regex).search
+
+ if args.invert_match:
+ filt_function = lambda x: not re.compile(args.regex).search(x)
+
fasta = Fasta(args.fasta, default_seq=args.default_seq, key_function=eval(args.header_function), strict_bounds=not args.lazy, split_char=args.delimiter, filt_function=filt_function, read_long_names=args.long_names, rebuild=not args.no_rebuild)
regions_to_fetch, split_function = split_regions(args)
if not regions_to_fetch:
regions_to_fetch = fasta.keys()
- if args.invert_match:
- sequences_to_exclude = set([split_function(region)[0] for region in regions_to_fetch])
- fasta = Fasta(args.fasta, default_seq=args.default_seq, key_function=eval(args.header_function), strict_bounds=not args.lazy, split_char=args.delimiter, rebuild=not args.no_rebuild)
- regions_to_fetch = (key for key in fasta.keys() if key not in sequences_to_exclude)
- split_function = ucsc_split
header = False
for region in regions_to_fetch:
@@ -163,11 +163,11 @@ def main(ext_args=None):
header.add_argument('-t', '--no-coords', action="store_true", default=False, help="omit coordinates (e.g. chr:start-end) from output headers. default: %(default)s")
output.add_argument('-x', '--split-files', action="store_true", default=False, help="write each region to a separate file (names are derived from regions)")
output.add_argument('-l', '--lazy', action="store_true", default=False, help="fill in --default-seq for missing ranges. default: %(default)s")
- output.add_argument('-s', '--default-seq', type=check_seq_length, default='N', help='default base for missing positions and masking. default: %(default)s')
+ output.add_argument('-s', '--default-seq', type=check_seq_length, default=None, help='default base for missing positions and masking. default: %(default)s')
header.add_argument('-d', '--delimiter', type=str, default=None, help='delimiter for splitting names to multiple values (duplicate names will be discarded). default: %(default)s')
header.add_argument('-e', '--header-function', type=str, default='lambda x: x.split()[0]', help='python function to modify header lines e.g: "lambda x: x.split("|")[0]". default: %(default)s')
header.add_argument('-u', '--duplicates-action', type=str, default="stop", choices=("stop", "first", "last", "longest", "shortest"), help='entry to take when duplicate sequence names are encountered. default: %(default)s')
- matcher = header.add_mutually_exclusive_group()
+ matcher = parser.add_argument_group('matching arguments')
matcher.add_argument('-g', '--regex', type=str, default='.*', help='selected sequences are those matching regular expression. default: %(default)s')
matcher.add_argument('-v', '--invert-match', action="store_true", default=False, help="selected sequences are those not matching 'regions' argument. default: %(default)s")
masking = output.add_mutually_exclusive_group()
@@ -199,7 +199,10 @@ def main(ext_args=None):
def check_seq_length(value):
- if len(value) != 1:
+ if value is None:
+ pass # default value
+ elif len(value) != 1:
+ # user is passing a single character
raise argparse.ArgumentTypeError("--default-seq value must be a single character!")
return value
=====================================
tests/data/issue_141.fasta
=====================================
@@ -0,0 +1,1021 @@
+>gi|563317589|dbj|AB821309.1| Homo sapiens FGFR2-AHCYL1 mRNA for FGFR2-AHCYL1 fusion kinase protein, complete cds
+ATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCT
+CCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAGATGCCATCTCATCCGGAGATGATGAGGATGA
+CACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGAGAGCACCATACTGGACCAACACA
+GAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCAGCCGGGG
+GGAACCCAATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGG
+CTACAAGGTACGAAACCAGCACTGGAGCCTCATTATGGAAAGTGTGGTCCCATCTGACAAGGGAAATTAT
+ACCTGTGTGGTGGAGAATGAATACGGGTCCATCAATCACACGTACCACCTGGATGTTGTGGAGCGATCGC
+CTCACCGGCCCATCCTCCAAGCCGGACTGCCGGCAAATGCCTCCACAGTGGTCGGAGGAGACGTAGAGTT
+TGTCTGCAAGGTTTACAGTGATGCCCAGCCCCACATCCAGTGGATCAAGCACGTGGAAAAGAACGGCAGT
+AAATACGGGCCCGACGGGCTGCCCTACCTCAAGGTTCTCAAGCACTCGGGGATAAATAGTTCCAATGCAG
+AAGTGCTGGCTCTGTTCAATGTGACCGAGGCGGATGCTGGGGAATATATATGTAAGGTCTCCAATTATAT
+AGGGCAGGCCAACCAGTCTGCCTGGCTCACTGTCCTGCCAAAACAGCAAGCGCCTGGAAGAGAAAAGGAG
+ATTACAGCTTCCCCAGACTACCTGGAGATAGCCATTTACTGCATAGGGGTCTTCTTAATCGCCTGTATGG
+TGGTAACAGTCATCCTGTGCCGAATGAAGAACACGACCAAGAAGCCAGACTTCAGCAGCCAGCCGGCTGT
+GCACAAGCTGACCAAACGTATCCCCCTGCGGAGACAGGTAACAGTTTCGGCTGAGTCCAGCTCCTCCATG
+AACTCCAACACCCCGCTGGTGAGGATAACAACACGCCTCTCTTCAACGGCAGACACCCCCATGCTGGCAG
+GGGTCTCCGAGTATGAACTTCCAGAGGACCCAAAATGGGAGTTTCCAAGAGATAAGCTGACACTGGGCAA
+GCCCCTGGGAGAAGGTTGCTTTGGGCAAGTGGTCATGGCGGAAGCAGTGGGAATTGACAAAGACAAGCCC
+AAGGAGGCGGTCACCGTGGCCGTGAAGATGTTGAAAGATGATGCCACAGAGAAAGACCTTTCTGATCTGG
+TGTCAGAGATGGAGATGATGAAGATGATTGGGAAACACAAGAATATCATAAATCTTCTTGGAGCCTGCAC
+ACAGGATGGGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCC
+CGGAGGCCACCCGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGG
+ACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAATGTATTCATCG
+AGATTTAGCAGCCAGAAATGTTTTGGTAACAGAAAACAATGTGATGAAAATAGCAGACTTTGGACTCGCC
+AGAGATATCAACAATATAGACTATTACAAAAAGACCACCAATGGGCGGCTTCCAGTCAAGTGGATGGCTC
+CAGAAGCCCTGTTTGATAGAGTATACACTCATCAGAGTGATGTCTGGTCCTTCGGGGTGTTAATGTGGGA
+GATCTTCACTTTAGGGGGCTCGCCCTACCCAGGGATTCCCGTGGAGGAACTTTTTAAGCTGCTGAAGGAA
+GGACACAGAATGGATAAGCCAGCCAACTGCACCAACGAACTGTACATGATGATGAGGGACTGTTGGCATG
+CAGTGCCCTCCCAGAGACCAACGTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACTCTCACAAC
+CAATGAGCAATTCCAGTTTGCTGATGACATGCAGGAGTTCACCAAATTCCCCACCAAAACTGGCCGAAGA
+TCTTTGTCTCGCTCGATCTCACAGTCCTCCACTGACAGCTACAGTTCAGCTGCATCCTACACAGATAGCT
+CTGATGATGAGGTTTCTCCCCGAGAGAAGCAGCAAACCAACTCCAAGGGCAGCAGCAATTTCTGTGTGAA
+GAACATCAAGCAGGCAGAATTTGGACGCCGGGAGATTGAGATTGCAGAGCAAGACATGTCTGCTCTGATT
+TCACTCAGGAAACGTGCTCAGGGGGAGAAGCCCTTGGCTGGTGCTAAAATAGTGGGCTGTACACACATCA
+CAGCCCAGACAGCGGTGTTGATTGAGACACTCTGTGCCCTGGGGGCTCAGTGCCGCTGGTCTGCTTGTAA
+CATCTACTCAACTCAGAATGAAGTAGCTGCAGCACTGGCTGAGGCTGGAGTTGCAGTGTTCGCTTGGAAG
+GGCGAGTCAGAAGATGACTTCTGGTGGTGTATTGACCGCTGTGTGAACATGGATGGGTGGCAGGCCAACA
+TGATCCTGGATGATGGGGGAGACTTAACCCACTGGGTTTATAAGAAGTATCCAAACGTGTTTAAGAAGAT
+CCGAGGCATTGTGGAAGAGAGCGTGACTGGTGTTCACAGGCTGTATCAGCTCTCCAAAGCTGGGAAGCTC
+TGTGTTCCGGCCATGAACGTCAATGATTCTGTTACCAAACAGAAGTTTGATAACTTGTACTGCTGCCGAG
+AATCCATTTTGGATGGCCTGAAGAGGACCACAGATGTGATGTTTGGTGGGAAACAAGTGGTGGTGTGTGG
+CTATGGTGAGGTAGGCAAGGGCTGCTGTGCTGCTCTCAAAGCTCTTGGAGCAATTGTCTACATTACCGAA
+ATCGACCCCATCTGTGCTCTGCAGGCCTGCATGGATGGGTTCAGGGTGGTAAAGCTAAATGAAGTCATCC
+GGCAAGTCGATGTCGTAATAACTTGCACAGGAAATAAGAATGTAGTGACACGGGAGCACTTGGATCGCAT
+GAAAAACAGTTGTATCGTATGCAATATGGGCCACTCCAACACAGAAATCGATGTGACCAGCCTCCGCACT
+CCGGAGCTGACGTGGGAGCGAGTACGTTCTCAGGTGGACCATGTCATCTGGCCAGATGGCAAACGAGTTG
+TCCTCCTGGCAGAGGGTCGTCTACTCAATTTGAGCTGCTCCACAGTTCCCACCTTTGTTCTGTCCATCAC
+AGCCACAACACAGGCTTTGGCACTGATAGAACTCTATAATGCACCCGAGGGGCGATACAAGCAGGATGTG
+TACTTGCTTCCTAAGAAAATGGATGAATACGTTGCCAGCTTGCATCTGCCATCATTTGATGCCCACCTTA
+CAGAGCTGACAGATGACCAAGCAAAATATCTGGGACTCAACAAAAATGGGCCATTCAAACCTAATTATTA
+CAGATACTAA
+>gi|557361099|gb|KF435150.1| Homo sapiens MDM4 protein variant Y (MDM4) mRNA, complete cds, alternatively spliced
+ATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAGTGCTTGCAGGATCTCTCCTGGACAAA
+TCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCATGCAGCAGGTGCGCAAGGTGAAATGTT
+CACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGGTGAAGCAACTTTATGATCAGCAGGAG
+CAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACTGGGACGTCAGAGCTTCTCCGTGAAAG
+ACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACTTTAGCCACTGCTACTACAGCAAAGTG
+CAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCTCAGAGCA
+TAAATGCATACATTCTAGAGAAGGTGATTGAAGTGGGAAAAAATGATGACCTGGAGGACTC
+>gi|557361097|gb|KF435149.1| Homo sapiens MDM4 protein variant G (MDM4) mRNA, complete cds
+ATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAGTGCTTGCAGGATCTCTCCTGGACAAA
+TCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCATGCAGCAGGTGCGCAAGGTGAAATGTT
+CACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGGTGAAGCAACTTTATGATCAGCAGGAG
+CAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACTGGGACGTCAGAGCTTCTCCGTGAAAG
+ACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACTTTAGCCACTGCTACTACAGCAAAGTG
+CAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCTCAGAGCA
+TAAATGCATACATTCTAGAGAAGATGAAGACTTAATTGAAAATTTAGCCCAAGATGAAACATCTAGGCTG
+GACCTTGGATTTGAGGAGTGGGATGTAGCTGGCCTGCCTTGGTGGTTTTTAGGAAACTTGAGAAGCAACT
+ATACACCTAGAAGTAATGGCTCAACTGATTTACAGACAAATCAGGTGATTGAAGTGGGAAAAAATGATGA
+CCTGGAGGACTC
+>gi|543583796|ref|NR_104216.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 8, non-coding RNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT
+TCTGTAGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCCCGGCCTGGATACA
+AGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCGAAATTTGCTACAT
+GACAATGAGCTGTCAGGGCGACATACCTTCTGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTT
+AAAGACCATGCTGGATGGACACCATTGCATGAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTAT
+TGCTCCAGCATAAGGCATTGGTGAACACCACCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAA
+GAATGGGCATGTGGATATAGTCAAGCTGTTACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTT
+GGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATG
+AATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTAT
+AGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAA
+TATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGT
+GTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAA
+AGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAG
+CTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACA
+ACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGT
+GACTCAGACCATCAATACAGTCGCATACCATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTAT
+ATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTT
+CGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGAT
+GAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTT
+TTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTA
+GGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCA
+TGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCT
+TGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAA
+AAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTAT
+TGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTAT
+CCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTT
+TTTATCTTGTATATCATCAGGAAATTGTGATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAA
+ATCAACACTAGGCTCATGGTACATATTTTTATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTG
+TTTATCTACTACATGTGTATATATACTTAGAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAA
+AAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTG
+GTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTT
+TTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCC
+AGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGC
+AAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGT
+GCTCTCATTCATGAATCGACAAGGATACATTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTT
+TAATAATTCCTTCCTAGACATTGAATATACTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGAC
+TTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTT
+TAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGT
+TTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATA
+TGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCA
+GTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGC
+GTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACA
+GACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTG
+AATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCC
+TCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAG
+CAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTT
+TTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCA
+TATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGG
+AAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATAT
+TTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAA
+TAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCA
+CATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCAC
+TTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTG
+CTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGT
+GAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTT
+TATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTC
+TGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTG
+GGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCA
+TGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAA
+TGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCA
+TGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCACATCAAACTGAATGAATAAATAAATATTGAG
+AAGTTGAAAAAAAAAAAAAAAAA
+>gi|543583795|ref|NR_104215.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 7, non-coding RNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGATGCAGGAAAC
+AAGAAGAATTCAATTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGAGTAAAGCTT
+CAGTGCAAACCCAGCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATTTGTTTCCCC
+AAGTCCTCCTGCAGATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAGCAAAAAAAG
+AAAACTTTAGCTGAAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAATTTGACTCCA
+AAGAGGAATCTAAGCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCCTCAGATAAA
+TGGTGAAATAGACTTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTAACTGAAGTC
+TCTTTACCATTGGCTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGACTCCTGAGA
+AGGTCTGCAAAAATTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACGTGGCCATCA
+CAATAGACTTTCCAGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGAGATTTTGTT
+AAGCAAACGGTGCCCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCAAACGTAAAG
+TTGGTGGTACATCAGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACCAGGTACACC
+ACCTTCTACATTAAGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAGCTGTTGCCC
+AATATGGCTGTGAAAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGGGCGACATAC
+CTTCTGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATGGACACCATT
+GCATGAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCATTGGTGAAC
+ACCACCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATATAGTCAAGC
+TGTTACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGATTATACAGA
+TGATGAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCA
+GTAATGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAAC
+AGAAAATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAAC
+TCATGTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGC
+TGGATTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATG
+AAATTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATG
+CTACTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGT
+GGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCAT
+ACCATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTA
+TCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATG
+TCCTTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGG
+TTTGTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATAT
+TTGTCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTA
+GAAGCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTA
+TTCAGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATT
+ACTGTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTT
+TTTTAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATG
+TGCCACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTT
+AATAATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATT
+GTGATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATAT
+TTTTATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATAC
+TTAGAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGT
+CAGTCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAAT
+AATTTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATG
+GAGGCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAA
+GTATAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATAC
+CACCTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGAT
+ACATTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAAT
+ATACTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAA
+AAGAGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTC
+ATCAACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTT
+TAATTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCC
+TGACCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATT
+CTGATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAAT
+TTAAGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTC
+ATAGGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATG
+AGGTCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTG
+ACTGTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAA
+ACTTGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCT
+TCCTTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGG
+CTTATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTAT
+CTTTTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATT
+ACCTTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACT
+GATTGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCT
+ACTTGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCT
+AATACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAG
+TATATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAA
+AGATAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTT
+TTTTTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGG
+TTTGATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCC
+ATGGGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTC
+TATTCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAG
+CCACCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTT
+TCAAAGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA
+>gi|543583794|ref|NR_104212.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 6, non-coding RNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT
+TCTGTAGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGATGCAGGAAACAAGAAGAATTCAA
+TTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGAGTAAAGCTTCAGTGCAAACCCA
+GCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATTTGTTTCCCCAAGTCCTCCTGCA
+GATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAGCAAAAAAAGAAAACTTTAGCTG
+AAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAATTTGACTCCAAAGAGGAATCTAA
+GCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCCTCAGATAAATGGTGAAATAGAC
+TTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTAACTGAAGTCTCTTTACCATTGG
+CTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGACTCCTGAGAAGGTCTGCAAAAA
+TTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACGTGGCCATCACAATAGACTTTCC
+AGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGAGATTTTGTTAAGCAAACGGTGC
+CCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCAAACGTAAAGTTGGTGGTACATC
+AGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACCAGGTACACCACCTTCTACATTA
+AGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAGCTGTTGCCCAATATGGCTGTGA
+AAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGGGCGACATACCTTCTGTTGAATA
+CCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATGGACACCATTGCATGAAGCTTGC
+AATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCATTGGTGAACACCACCGGGTATC
+AAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATATAGTCAAGCTGTTACTTTCCTA
+TGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATG
+AAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTG
+GGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAG
+TGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTT
+CCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAAT
+TTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGG
+TCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTG
+TGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCC
+TCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCATGCGAGACC
+CGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGG
+GTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGC
+TTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCC
+AGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATC
+AAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTG
+CTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGG
+GTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCT
+TTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAG
+AATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGT
+GTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTT
+GTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGATTTAATCAT
+TAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTTATTCTGTAC
+ATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAGAGCATTTTC
+TCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCA
+TTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTC
+TTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTG
+GTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGG
+TATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGG
+CCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACATTAGATTATT
+TTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATACTTATAAAAT
+TAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTT
+GATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAA
+GATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTT
+GACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGG
+TGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATG
+AACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTA
+GGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTT
+TAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTT
+TTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGT
+TTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTA
+CTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTA
+CCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCT
+GTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATA
+ATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATT
+CCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGT
+CTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATA
+ACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCAT
+ATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTA
+TGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCT
+ACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACC
+TGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCT
+GTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTG
+GAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCT
+ACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTT
+TGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCA
+CATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA
+>gi|543583788|ref|NM_001282545.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 3, mRNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT
+TCTGTAGTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATGAAATCGCTATTGCT
+GCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTGGGCAGCGTAGGGAT
+GGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAGTGAGCTTGCAGTAA
+TTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTTCCTGGTGATGCAGT
+TCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAATTTGAATGGGTAAAA
+GCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGGTCCACGCAGAAGCA
+GGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTGTGGGGAACCTTCAA
+ACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCCTCAGTAGAAAGCCC
+AAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCATGCGAGACCCGATTCTGATCAGC
+GCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGGGTTCGGCAGGGCAA
+AGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGCTTCCTCTTGACAGC
+TGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCCAGTCATTGTACTGT
+TTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATCAAAAAAAAAAAAAA
+AGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTGCTTTTAAAGGTTTT
+TCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGGGTATCAAAGATTAA
+TGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCTTTTAATATTCTCCA
+TACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAGAATATTATCAAACA
+ATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGTGTTAAATTCTCCTA
+TCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTTGTTGTGTGTTTCTA
+CACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGATTTAATCATTAACATTGGTTTTT
+TTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTTATTCTGTACATTTGCTTGTAACT
+ATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAGAGCATTTTCTCTAACACATTTTA
+ATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCATTACTTTAAATTAA
+GAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTCTTAATTTCTTCCTT
+TGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTGGTGATTACTTGATT
+TACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGGTATGGGGAGGGCTT
+ACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGGCCAGATGTGGGGAG
+GTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACATTAGATTATTTTGAAACATTTTTT
+TAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATACTTATAAAATTAAAGACTTGGGGA
+AGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTTGATAACTACCAGAA
+TAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAAGATGCACTTACTTG
+AAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTTGACATGTTGTTTTT
+TCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGGTGAATTAGCTCTGA
+AACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATGAACACCATAGCACC
+AAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTAGGATTTTGGTTGTC
+ATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTTTAGACAGGTTTGTG
+TCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTTTTTGTCATTCATTT
+TCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGTTTCATCTTTGCTTT
+TGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTACTTTCTGTGTAGAT
+ATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTACCACAAATCATTAA
+AGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCTGTTGAATGAGGCTC
+AACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATAATGCTTTTTAATTA
+ATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATTCCGAATACAGTATA
+ACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGTCTCTAAAAGTGAGA
+GGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATAACTGTTTCCCTTTT
+TCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCATATCTATCTCAATTG
+TTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTATGATTGAAATAAGG
+GTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCTACTTGAATTTTAGT
+AAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACCTGCCTTGTAAATTT
+AATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCTGTGGGAATAAGACG
+ATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTGGAAAATGCATTAAT
+CATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCTACCCTGAACACATT
+AAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTTTGATAGATTGAGCT
+ACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCACATCAAACTGAATG
+AATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA
+>gi|543583786|ref|NM_001282543.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 2, mRNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCC
+CGGCCTGGATACAAGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCG
+AAATTTGCTACATGACAATGAGCTGTCAGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGAT
+GCAGGAAACAAGAAGAATTCAATTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGA
+GTAAAGCTTCAGTGCAAACCCAGCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATT
+TGTTTCCCCAAGTCCTCCTGCAGATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAG
+CAAAAAAAGAAAACTTTAGCTGAAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAAT
+TTGACTCCAAAGAGGAATCTAAGCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCC
+TCAGATAAATGGTGAAATAGACTTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTA
+ACTGAAGTCTCTTTACCATTGGCTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGA
+CTCCTGAGAAGGTCTGCAAAAATTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACG
+TGGCCATCACAATAGACTTTCCAGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGA
+GATTTTGTTAAGCAAACGGTGCCCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCA
+AACGTAAAGTTGGTGGTACATCAGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACC
+AGGTACACCACCTTCTACATTAAGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAG
+CTGTTGCCCAATATGGCTGTGAAAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGG
+GCGACATACCTTCTGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATG
+GACACCATTGCATGAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCA
+TTGGTGAACACCACCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATA
+TAGTCAAGCTGTTACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGA
+TTATACAGATGATGAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGC
+CACTGCTCAGTAATGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTT
+CAGAACAACAGAAAATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAG
+TACAGTAACTCATGTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTC
+AATGGATGCTGGATTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAG
+AAAAGTATGAAATTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTT
+TGATGGATGCTACTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTC
+ACTGCAGGTGGGGGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATA
+CAGTCGCATACCATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTT
+GTGTAATTATCACCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGAC
+TGTGTGATGTCCTTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAA
+TTTGCACGGTTTGTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGT
+CATTCATATTTGTCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTT
+TACCATTTAGAAGCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCAT
+GTCTTTCTATTCAGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGT
+GGTATCATTACTGTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTT
+TTTTTTTTTTTTTAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTG
+GTCTAAATGTGCCACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATT
+TCTTTTCTTAATAATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCAT
+CAGGAAATTGTGATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCAT
+GGTACATATTTTTATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTG
+TATATATACTTAGAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTA
+GCAAATTGTCAGTCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTAT
+TTGTAAAATAATTTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAG
+GTTGGCATGGAGGCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCC
+ATACAGTAAGTATAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGG
+GCAGGATACCACCTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATC
+GACAAGGATACATTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAG
+ACATTGAATATACTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCT
+CATGAACAAAAGAGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCT
+CTGAAGTTCATCAACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACAC
+ATTTTGCTTTAATTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACC
+TTTTGACCCTGACCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCA
+CATTTCATTCTGATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGA
+TTAAATAATTTAAGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTC
+TGTTGCCTCATAGGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAG
+ACACCTATGAGGTCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGT
+TTTTCCCTGACTGTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAA
+GCTCTTGAAACTTGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAG
+ATTCAAGCTTCCTTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTA
+TAAAATTGGCTTATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACA
+AAAGCTTATCTTTTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGA
+TACTTTATTACCTTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAA
+TTACACACTGATTGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTT
+TCTAGTTCTACTTGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCT
+GTCTCTGCTAATACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCA
+GATGGGAAGTATATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACT
+TCACCTAAAAGATAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCC
+CACCTTTTTTTTTTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATAT
+TTGGGGAGGTTTGATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTT
+ATTGTTTCCATGGGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTC
+ACAATTGTCTATTCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAAT
+TACTAAAAGCCACCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGT
+CAACCCTTTTCAAAGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAA
+AAAAAA
+>gi|543583785|ref|NM_000465.3| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 1, mRNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT
+TCTGTAGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCCCGGCCTGGATACA
+AGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCGAAATTTGCTACAT
+GACAATGAGCTGTCAGATTTGAAAGAAGATAAACCTAGGAAAAGTTTGTTTAATGATGCAGGAAACAAGA
+AGAATTCAATTAAAATGTGGTTTAGCCCTCGAAGTAAGAAAGTCAGATATGTTGTGAGTAAAGCTTCAGT
+GCAAACCCAGCCTGCAATAAAAAAAGATGCAAGTGCTCAGCAAGACTCATATGAATTTGTTTCCCCAAGT
+CCTCCTGCAGATGTTTCTGAGAGGGCTAAAAAGGCTTCTGCAAGATCTGGAAAAAAGCAAAAAAAGAAAA
+CTTTAGCTGAAATCAACCAAAAATGGAATTTAGAGGCAGAAAAAGAAGATGGTGAATTTGACTCCAAAGA
+GGAATCTAAGCAAAAGCTGGTATCCTTCTGTAGCCAACCATCTGTTATCTCCAGTCCTCAGATAAATGGT
+GAAATAGACTTACTAGCAAGTGGCTCCTTGACAGAATCTGAATGTTTTGGAAGTTTAACTGAAGTCTCTT
+TACCATTGGCTGAGCAAATAGAGTCTCCAGACACTAAGAGCAGGAATGAAGTAGTGACTCCTGAGAAGGT
+CTGCAAAAATTATCTTACATCTAAGAAATCTTTGCCATTAGAAAATAATGGAAAACGTGGCCATCACAAT
+AGACTTTCCAGTCCCATTTCTAAGAGATGTAGAACCAGCATTCTGAGCACCAGTGGAGATTTTGTTAAGC
+AAACGGTGCCCTCAGAAAATATACCATTGCCTGAATGTTCTTCACCACCTTCATGCAAACGTAAAGTTGG
+TGGTACATCAGGGAGGAAAAACAGTAACATGTCCGATGAATTCATTAGTCTTTCACCAGGTACACCACCT
+TCTACATTAAGTAGTTCAAGTTACAGGCGAGTGATGTCTAGTCCCTCAGCAATGAAGCTGTTGCCCAATA
+TGGCTGTGAAAAGAAATCATAGAGGAGAGACTTTGCTCCATATTGCTTCTATTAAGGGCGACATACCTTC
+TGTTGAATACCTTTTACAAAATGGAAGTGATCCAAATGTTAAAGACCATGCTGGATGGACACCATTGCAT
+GAAGCTTGCAATCATGGGCACCTGAAGGTAGTGGAATTATTGCTCCAGCATAAGGCATTGGTGAACACCA
+CCGGGTATCAAAATGACTCACCACTTCACGATGCAGCCAAGAATGGGCATGTGGATATAGTCAAGCTGTT
+ACTTTCCTATGGAGCCTCCAGAAATGCTGTTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGAT
+GAAAGTATGAAATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAA
+TGAACACTGGGCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAA
+AATGCTCAGTGAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCAT
+GTTGTTGTTCCTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGA
+TTCTAAAATTTGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAAT
+TCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTAC
+TTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGG
+GCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCA
+TGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCAC
+CCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCT
+TTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTG
+TGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGT
+CTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAG
+CTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCA
+GATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTG
+TTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTT
+AGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCC
+ACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATA
+ATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGA
+TTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTT
+ATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAG
+AGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGT
+CCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATT
+TTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGG
+CAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTAT
+AGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACC
+TGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACAT
+TAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATAC
+TTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGA
+GGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCA
+ACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAAT
+TCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGAC
+CTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGA
+TAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAA
+GACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAG
+GTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGT
+CTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTG
+TTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTT
+GTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCT
+TCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTA
+TTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTT
+TTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCT
+TAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATT
+GCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTT
+GAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATA
+CTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATA
+TTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGAT
+AGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTT
+TTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTG
+ATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGG
+GTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATT
+CTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCAC
+CATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAA
+AGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA
+>gi|543583740|ref|NM_001282549.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 5, mRNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTACTAACATTCTGAGAGAGCCTGTGTGTTTAGGAGGATGTGAGCACATCT
+TCTGTAGTAATTGTGTAAGTGACTGCATTGGAACTGGATGTCCAGTGTGTTACACCCCGGCCTGGATACA
+AGACTTGAAGATAAATAGACAACTGGACAGCATGATTCAACTTTGTAGTAAGCTTCGAAATTTGCTACAT
+GACAATGAGCTGTCAGGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAA
+TTCCTGAAGGTCCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTA
+CTTCTATTTGTGGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGG
+GGCCAGATCCTCAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACC
+ATGCGAGACCCGATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCA
+CCCAGAGAGGGTTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCC
+TTTGAGTTGCTTCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTT
+GTGAGAGCCCAGTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTG
+TCTTTGAATCAAAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAA
+GCTGGGATTGCTTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTC
+AGATTATTGGGTATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACT
+GTTTGAGTCTTTTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTT
+TAGTAAACAGAATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGC
+CACCATAGGTGTTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAAT
+AATTTACTTTGTTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTG
+ATTTAATCATTAACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTT
+TATTCTGTACATTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTA
+GAGCATTTTCTCTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAG
+TCCAACGTCATTACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAAT
+TTTGAAGGTCTTAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAG
+GCAGAAGTTGGTGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTA
+TAGAAGTAGGTATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCAC
+CTGAGAGTGGCCAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACA
+TTAGATTATTTTGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATA
+CTTATAAAATTAAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAG
+AGGACAGTTTGATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATC
+AACATCTTAAGATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAA
+TTCTTTCTTTGACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGA
+CCTTGCTGGGTGAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTG
+ATAGAAAATGAACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTA
+AGACTCTCTAGGATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATA
+GGTCACATTTTAGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGG
+TCTCTTAGTTTTTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACT
+GTTAAGCAGTTTCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACT
+TGTGATTGTACTTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCC
+TTCTTTTTTACCACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTT
+ATTCTGTGCTGTTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTT
+TTTTAACATAATGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACC
+TTAGATTATTCCGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGAT
+TGCTTTGTGTCTCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACT
+TGAATTTATAACTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAAT
+ACTTTACCATATCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTAT
+ATTAGCATTATGATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGA
+TAGTTTAGCTACTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTT
+TTTTTGCACCTGCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTT
+GATGTTTCCTGTGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATG
+GGTCAGTGTGGAAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTAT
+TCTGTTTCCTACCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCA
+CCATTTTCTTTGATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCA
+AAGATACGCACATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA
+>gi|543583738|ref|NM_001282548.1| Homo sapiens BRCA1 associated RING domain 1 (BARD1), transcript variant 4, mRNA
+CCCCGCCCCTCTGGCGGCCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGGCCTGC
+AGCTTCCCTGTGGTTTCCCGAGGCTTCCTTGCTTCCCGCTCTGCGAGGAGCCTTTCATCCGAAGGCGGGA
+CGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGC
+GCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAG
+CTGCTGCGCTGCTCGCGTTGTAATATATTTGGTCTGCGGCCTGTCGATTATACAGATGATGAAAGTATGA
+AATCGCTATTGCTGCTACCAGAGAAGAATGAATCATCCTCAGCTAGCCACTGCTCAGTAATGAACACTGG
+GCAGCGTAGGGATGGACCTCTTGTACTTATAGGCAGTGGGCTGTCTTCAGAACAACAGAAAATGCTCAGT
+GAGCTTGCAGTAATTCTTAAGGCTAAAAAATATACTGAGTTTGACAGTACAGTAACTCATGTTGTTGTTC
+CTGGTGATGCAGTTCAAAGTACCTTGAAGTGTATGCTTGGGATTCTCAATGGATGCTGGATTCTAAAATT
+TGAATGGGTAAAAGCATGTCTACGAAGAAAAGTATGTGAACAGGAAGAAAAGTATGAAATTCCTGAAGGT
+CCACGCAGAAGCAGGCTCAACAGAGAACAGCTGTTGCCAAAGCTGTTTGATGGATGCTACTTCTATTTGT
+GGGGAACCTTCAAACACCATCCAAAGGACAACCTTATTAAGCTCGTCACTGCAGGTGGGGGCCAGATCCT
+CAGTAGAAAGCCCAAGCCAGACAGTGACGTGACTCAGACCATCAATACAGTCGCATACCATGCGAGACCC
+GATTCTGATCAGCGCTTCTGCACACAGTATATCATCTATGAAGATTTGTGTAATTATCACCCAGAGAGGG
+TTCGGCAGGGCAAAGTCTGGAAGGCTCCTTCGAGCTGGTTTATAGACTGTGTGATGTCCTTTGAGTTGCT
+TCCTCTTGACAGCTGAATATTATACCAGATGAACATTTCAAATTGAATTTGCACGGTTTGTGAGAGCCCA
+GTCATTGTACTGTTTTTAATGTTCACATTTTTACAAATAGGTAGAGTCATTCATATTTGTCTTTGAATCA
+AAAAAAAAAAAAAAGTCTAATGCCAGATTAGGAATTCATGTTATGTTTACCATTTAGAAGCTGGGATTGC
+TTTTAAAGGTTTTTCTTTTTAAAATTGGCATGTTTTTGATTTATCATGTCTTTCTATTCAGATTATTGGG
+TATCAAAGATTAATGAGGACACCAGAATCTTGGTTAAATAGACAAGTGGTATCATTACTGTTTGAGTCTT
+TTAATATTCTCCATACCTGCCACCAGTGAAAAAACTTGCCTTTTTTTTTTTTTTTTTTTTAGTAAACAGA
+ATATTATCAAACAATTTATTTTGGCTTTATTGAAAAAAGAGTATTTGGTCTAAATGTGCCACCATAGGTG
+TTAAATTCTCCTATCTGCAATTGTCTTTATCCTATATTGTGTTCATTTCTTTTCTTAATAATTTACTTTG
+TTGTGTGTTTCTACACTTTCATCCCTGTTTTTTATCTTGTATATCATCAGGAAATTGTGATTTAATCATT
+AACATTGGTTTTTTTGTGTGTGTGGTAAAAATCAACACTAGGCTCATGGTACATATTTTTATTCTGTACA
+TTTGCTTGTAACTATCAATTTGTAACTCTGTTTATCTACTACATGTGTATATATACTTAGAGCATTTTCT
+CTAACACATTTTAATGTTAGTATTTTTTAAAAGGTCTGACCAGTCTAGCAAATTGTCAGTCCAACGTCAT
+TACTTTAAATTAAGAAGCAGTCTTCTTCTGGTAAACCTTGTTGGTATTTGTAAAATAATTTTGAAGGTCT
+TAATTTCTTCCTTTGTAAAAGGAAAAGGTTTTTTTTAAAGTTTTTAGGTTGGCATGGAGGCAGAAGTTGG
+TGATTACTTGATTTACAACAGATTTTTTCCAGATCATACAAAAGGCCATACAGTAAGTATAGAAGTAGGT
+ATGGGGAGGGCTTACTAATATCAAATAGGCAAGGCCTTAGTGAGTGGGCAGGATACCACCTGAGAGTGGC
+CAGATGTGGGGAGGTTACTCTGCTCTGGGTGCTCTCATTCATGAATCGACAAGGATACATTAGATTATTT
+TGAAACATTTTTTTAAGAAGCAGAATTCTTTAATAATTCCTTCCTAGACATTGAATATACTTATAAAATT
+AAAGACTTGGGGAAGGAGACACTGAGAGACTTGCCAGTTTGGTTCCTCATGAACAAAAGAGGACAGTTTG
+ATAACTACCAGAATAGAATATCCCTAGTTTTAAAATAGTGAGAATCTCTGAAGTTCATCAACATCTTAAG
+ATGCACTTACTTGAAAGTTTGAGATTCTGTTTATCATTTGAAAACACATTTTGCTTTAATTCTTTCTTTG
+ACATGTTGTTTTTTCATATCAAGAAATATATGAACAAAATAATAACCTTTTGACCCTGACCTTGCTGGGT
+GAATTAGCTCTGAAACACTCTCTACAACCAGTAATGCATTTGTCCCACATTTCATTCTGATAGAAAATGA
+ACACCATAGCACCAAACAAAAATCCGAGGCGTTAGATAATGTCTGGATTAAATAATTTAAGACTCTCTAG
+GATTTTGGTTGTCATTTTTTATTTATAACAGACTTTAAGTCACTTTCTGTTGCCTCATAGGTCACATTTT
+AGACAGGTTTGTGTCTGTTCCTTGCATCTGAATTCCTGATTGTAAAGACACCTATGAGGTCTCTTAGTTT
+TTGTCATTCATTTTCTTGGTTTATCACCCCTCCCTTCTTTTTGTTGTTTTTCCCTGACTGTTAAGCAGTT
+TCATCTTTGCTTTTGTTAAATATTTGACAGCAGTTAGTTTGTGTTAAGCTCTTGAAACTTGTGATTGTAC
+TTTCTGTGTAGATATACATGTAATTATTTTTTATTTTTCAATCATAGATTCAAGCTTCCTTCTTTTTTAC
+CACAAATCATTAAAGTTATTTGTGTTTCCATATACCTGTGTCTTGTATAAAATTGGCTTATTCTGTGCTG
+TTGAATGAGGCTCAACATGACTTGGTGAGGAAGTCTATTAACTAACAAAAGCTTATCTTTTTTAACATAA
+TGCTTTTTAATTAATTTTGAATAAAAATATTTCTAAAGTGTACTAGATACTTTATTACCTTAGATTATTC
+CGAATACAGTATAACTTTGATAGTTTGGAATAGTCATTAAGAAACAATTACACACTGATTGCTTTGTGTC
+TCTAAAAGTGAGAGGCTGGTAGCTTTTCCACATTCTCATGGCTATTTTCTAGTTCTACTTGAATTTATAA
+CTGTTTCCCTTTTTCCTTGACAGCTGCCACTTTGTAGCTATTTTTCTGTCTCTGCTAATACTTTACCATA
+TCTATCTCAATTGTTTTTTCTTTTGACTTGCTGAAAAATAGAAACCAGATGGGAAGTATATTAGCATTAT
+GATTGAAATAAGGGTAAATGAGCAATGTGTGAAGGTTTTCACTGACTTCACCTAAAAGATAGTTTAGCTA
+CTTGAATTTTAGTAAATAGAATTTTTCCTTTATTTCATCGGTCCCCCCACCTTTTTTTTTTTTTGCACCT
+GCCTTGTAAATTTAATAGTTAAGTGACCTCTGCCTAGAGGATGATATTTGGGGAGGTTTGATGTTTCCTG
+TGGGAATAAGACGATTCACAGGTGAGAGTGGGGCCACATTAGCTGTTATTGTTTCCATGGGTCAGTGTGG
+AAAATGCATTAATCATATTCTAAACGTTCATGGGCCTCATTACAGTCACAATTGTCTATTCTGTTTCCTA
+CCCTGAACACATTAAAATGGTAGGAACTAATGCTTGTCTTATTTAATTACTAAAAGCCACCATTTTCTTT
+GATAGATTGAGCTACAGATTGTAAACTTCATGTATTTCTTTATAAGTCAACCCTTTTCAAAGATACGCAC
+ATCAAACTGAATGAATAAATAAATATTGAGAAGTTGAAAAAAAAAAAAAAAAA
+>gi|530384540|ref|XM_005249645.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X4, mRNA
+GTGCTGGGACTACAGAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCTGTCCCA
+TGTGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAACCTTCGCA
+GCCCAGGAAAACTGCTTCCAGTATCTTCAGCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAGCCAGGAC
+CCCTCGGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGGGCCTGCGCTCCCTGGC
+ACAGCACCCCAGCGCCCTGCGCTTCCTGGCCGACCATGGTGCGGTCGACACCATCTTCTCCCTGCAGGGA
+GACTCCAGCCTGTTTGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCATGCGAG
+GTGGAGCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCATGGATCA
+CGTTGAAGAGTCCTTGTGCTCCGCGGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACC
+TTCGGGCGCTGCCAGAGCCCCTGGACGGAAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCCTGTCTGC
+TGGAGAGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGT
+GTTCAGTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCCCACCCAC
+ATGGGACCCCTGGCTTTGGGGATCCTGAAGCTCGAGCACTGTCCACAGGCACTGAGGACCCAGGCCTTCC
+AGGTCCTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAGGCTTGCT
+GGACGGGACGGCAGACGATGCCACGACGGTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTC
+CTGTGCCGCACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGGCCCCAGG
+CGTCTCTACTGGGGGCTACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAGTGT
+GGGGGGCCACCTCTGTGGGACCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTGGGG
+ACGCTGTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAGTGCCTCG
+AGAGCCCCGGCTCCAGCCCCACGGTTCTGAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTC
+ACCCAAGACCCCCGGCTGCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCTGTG
+CTGCAGAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACCCAGCTGA
+GCAGGCACTGGGGAGGACAGGCTGACTTCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCT
+GCAGCTCCTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCTGTCCAGC
+CAGGGCCTGCACGCCCCCACCAGCCCTGAGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGGATTGGAG
+GGCCGTGTGCTCACTGCGCAGCATGGGAAGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATGTCCGGGG
+CCAGCCCCCATCATGTACCGGAGTCCTGTTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCATCCGCAC
+TTGCTCCCTGTCCCCCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAGGGCTTCC
+CACGGCGGGCGGTCATGCAAGTCTTCACTGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCCAGGACAC
+GGAGCAGTTCGTGGCCACTGTGCTGCAGGCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGCCCAGGGC
+CTGGAGCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCCGCGTACCCACTGCCCCTATGCCGTGG
+CCCTACCCGAGGTGGCCCCAGCCCAGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTT
+TGACTTCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCTCCTTCTC
+TTCCTGAGGGACAAGATTGCTTCCTACAGCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCG
+CAGAGGCCACCCTGCCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCCTGAGGC
+TGTGCTGGCCATGCTCAGGTCCCTAGACCTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAGCGACCAC
+GTGGAAAAGAGTCCCCAGTCCCTCCTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGG
+CCGACTGCTACTGAGCAGAACCAGAGTCTGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACCATGTCCT
+TCTGTGGGACACTGCCAGCCCCAGGGCTCCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAGGACCAGG
+AGAGAAGCAAGGTCAAGAAATCCCACAGTTTGATGTATTAAAGAAATGACTTATTTCTACTCAAAATAAA
+TGGCATTGAAGTCTTTCTTTAA
+>gi|530384538|ref|XM_005249644.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X3, mRNA
+ACCGGATGCTCGGCATGAACCACTAGGCGCCTGGCGGGGGTGATCTGTCGGAGCGACCGGCTTGGCGCCT
+GCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGTCTGGGCCCTCGAGGCTTCCAGAGCGGC
+CTCCAGGGGTGCAGTCTCAGTTCCCCACGCCAGCCGTCTCCGTCCTCCGCCTCCTCCGGGCCTGGCAGGT
+GGCACTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGGCGGAGGACGCAACCGAGCGGGCCTGCG
+GCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGTTCTGGTAGATCCCAGGCA
+GCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACGGTCACTGAAGGAGAGTCC
+AGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCTGTCCCATGTGCTGAAAGTCCAGGACC
+TGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAACCTTCGCAGCCCAGGAAAACTGCTTCCA
+GTATCTTCAGGTGCGGTCGACACCATCTTCTCCCTGCAGGGAGACTCCAGCCTGTTTGTGGCCTCGGCGG
+CCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCATGCGAGGTGGAGCCGAGGGGCAGCCCTGCCTGCC
+GGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCATGGATCACGTTGAAGAGTCCTTGTGCTCCGCGGCC
+ACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACCTTCGGGCGCTGCCAGAGCCCCTGGACGG
+AAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCCTGTCTGCTGGAGAGAGACCCCATCCCCGCCGCACA
+CTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGTGTTCAGTTCTTCCGACGGCAGCCTGTGG
+GAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCCCACCCACATGGGACCCCTGGCTTTGGGGATCCTGA
+AGCTCGAGCACTGTCCACAGGCACTGAGGACCCAGGCCTTCCAGGTCCTTCTCCAGCCCCTGGCCTGTGT
+CCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAGGCTTGCTGGACGGGACGGCAGACGATGCCACGACG
+GTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTCCTGTGCCGCACCCTGGCTCACCTGGAGG
+AGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGGCCCCAGGCGTCTCTACTGGGGGCTACAGTGACTGT
+CCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAGTGTGGGGGGCCACCTCTGTGGGACCCTGGCG
+GGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTGGGGACGCTGTCACAGGGGACAGGCCCCCAGG
+AGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAGTGCCTCGAGAGCCCCGGCTCCAGCCCCACGGTTCT
+GAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTCACCCAAGACCCCCGGCTGCTCTGATCTC
+GGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCTGTGCTGCAGAAACGCCTGTGCCACCCCTGCT
+GGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACCCAGCTGAGCAGGCACTGGGGAGGACAGGCTGACTT
+CAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCTGCAGCTCCTCCAGGACCCTGAGAGTTAT
+GTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCTGTCCAGCCAGGGCCTGCACGCCCCCACCAGCCCTG
+AGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGGATTGGAGGGCCGTGTGCTCACTGCGCAGCATGGGA
+AGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATGTCCGGGGCCAGCCCCCATCATGTACCGGAGTCCTG
+TTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCATCCGCACTTGCTCCCTGTCCCCCAGAGCCTGTTCC
+TGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAGGGCTTCCCACGGCGGGCGGTCATGCAAGTCTTCAC
+TGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCCAGGACACGGAGCAGTTCGTGGCCACTGTGCTGCAG
+GCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGCCCAGGGCCTGGAGCTGGCCCTCGTGTTCCTGGGCC
+AGACTTTGGGGCCGCCGCGTACCCACTGCCCCTATGCCGTGGCCCTACCCGAGGTGGCCCCAGCCCAGCC
+ACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTTTGACTTCGCCTTTTGTGCCTTGTTTGAC
+TGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCTCCTTCTCTTCCTGAGGGACAAGATTGCTTCCTACA
+GCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCGCAGAGGCCACCCTGCCGAGGTGGCGGGC
+GGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCCTGAGGCTGTGCTGGCCATGCTCAGGTCCCTAGAC
+CTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAGCGACCACGTGGAAAAGAGTCCCCAGTCCCTCCTGC
+AGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGGCCGACTGCTACTGAGCAGAACCAGAGTC
+TGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACCATGTCCTTCTGTGGGACACTGCCAGCCCCAGGGCT
+CCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAGGACCAGGAGAGAAGCAAGGTCAAGAAATCCCACAG
+TTTGATGTATTAAAGAAATGACTTATTTCTACTCAAAATAAATGGCATTGAAGTCTTTCTTTAA
+>gi|530384536|ref|XM_005249643.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X2, mRNA
+TCTGTCGGAGCGACCGGCTTGGCGCCTGCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGT
+CTGGGCCCTCGAGGCTTCCAGAGCGGCCTCCAGGGGTGCAGTCTCAGTTCCCCACGCCAGCCGTCTCCGT
+CCTCCGCCTCCTCCGGGCCTGGCAGGTGGCACTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGG
+CGGAGGACGCAACCGAGCGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCT
+CTGTGCTGTTCTGGTAGATCCCAGGCAGCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGG
+TTTAAAACGGTCACTGAAGGAGAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGC
+TGTCCCATGTGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAAC
+CTTCGCAGCCCAGGAAAACTGCTTCCAGTATCTTCAGCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAG
+CCAGGACCCCTCGGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGGGCCTGCGCT
+CCCTGGCACAGCACCCCAGCGCCCTGCGCTTCCTGGCCGACCATGGTGCGGTCGACACCATCTTCTCCCT
+GCAGGGAGACTCCAGCCTGTTTGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCC
+ATGCGAGGTGGAGCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCA
+TGGATCACGTTGAAGAGTCCTTGTGCTCCGCGGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGAC
+CACGACCTTCGGGCGCTGCCAGAGCCCCTGGACGGAAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCC
+TGTCTGCTGGAGAGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTT
+CTCCCGTGTTCAGTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCC
+CACCCACATGGGACCCCTGGCTTTGGGGATCCTGAAGCTCGAGCACTGTCCACAGGCACTGAGGACCCAG
+GCCTTCCAGGTCCTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAG
+GCTTGCTGGACGGGACGGCAGACGATGCCACGACGGTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGC
+CGGCCTCCTGTGCCGCACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGG
+CCCCAGGCGTCTCTACTGGGGGCTACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCT
+CCAGTGTGGGGGGCCACCTCTGTGGGACCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTT
+CCTGGGGACGCTGTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAG
+TGCCTCGAGAGCCCCGGCTCCAGCCCCACGGTTCTGAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCC
+TGAGCTCACCCAAGACCCCCGGCTGCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTT
+CCCTGTGCTGCAGAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACC
+CAGCTGAGCAGGCACTGGGGAGGACAGGCTGACTTCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGC
+TGGCCCTGCAGCTCCTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCT
+GTCCAGCCAGGGCCTGCACGCCCCCACCAGCCCTGAGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGG
+ATTGGAGGGCCGTGTGCTCACTGCGCAGCATGGGAAGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATG
+TCCGGGGCCAGCCCCCATCATGTACCGGAGTCCTGTTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCA
+TCCGCACTTGCTCCCTGTCCCCCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAG
+GGCTTCCCACGGCGGGCGGTCATGCAAGTCTTCACTGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCC
+AGGACACGGAGCAGTTCGTGGCCACTGTGCTGCAGGCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGC
+CCAGGGCCTGGAGCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCCGCGTACCCACTGCCCCTAT
+GCCGTGGCCCTACCCGAGGTGGCCCCAGCCCAGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGG
+GGCTCTTTGACTTCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCT
+CCTTCTCTTCCTGAGGGACAAGATTGCTTCCTACAGCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACT
+GCCTCCGCAGAGGCCACCCTGCCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGC
+CTGAGGCTGTGCTGGCCATGCTCAGGTCCCTAGACCTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAG
+CGACCACGTGGAAAAGAGTCCCCAGTCCCTCCTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGG
+GACGAGGCCGACTGCTACTGAGCAGAACCAGAGTCTGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACC
+ATGTCCTTCTGTGGGACACTGCCAGCCCCAGGGCTCCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAG
+GACCAGGAGAGAAGCAAGGTCAAGAAATCCCACAGTTTGATGTATTAAAGAAATGACTTATTTCTACTCA
+AAATAAATGGCATTGAAGTCTTTCTTTAA
+>gi|530384534|ref|XM_005249642.1| PREDICTED: Homo sapiens BRCA1-associated ATM activator 1 (BRAT1), transcript variant X1, mRNA
+GCGACCGGCTTGGCGCCTGCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGTCTGGGCCCT
+CGAGGCTTCCAGAGCGGCCTCCAGGGGTGCAGTCTCAGTTCCCCACGCCAGCCGTCTCCGTCCTCCGCCT
+CCTCCGGGCCTGGCAGGTGGCACTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGGCGGAGGACG
+CAACCGAGCGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGT
+TCTGGTAGATCCCAGGCAGCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACG
+GTCACTGAAGGAGAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCTGTCCCATG
+TGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCTCACTGCGCCTGGCAGGAACCTTCGCAGC
+CCAGGAAAACTGCTTCCAGTATCTTCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAGCCAGGACCCCTC
+GGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGGGCCTGCGCTCCCTGGCACAGC
+ACCCCAGCGCCCTGCGCTTCCTGGCCGACCATGGTGCGGTCGACACCATCTTCTCCCTGCAGGGAGACTC
+CAGCCTGTTTGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCATGCGAGGTGGA
+GCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCCGCGTGTGCCCAGAAGATCATGGATCACGTTG
+AAGAGTCCTTGTGCTCCGCGGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACCTTCGG
+GCGCTGCCAGAGCCCCTGGACGGAAGCCCTGTGGGTGCGGCTGAGTCCCCGCGTGGCCTGTCTGCTGGAG
+AGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGTGTTCA
+GTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCTGAGCTGCCTGGGTCCCACCCACATGGG
+ACCCCTGGCTTTGGGGATCCTGAAGCTCGAGCACTGTCCACAGGCACTGAGGACCCAGGCCTTCCAGGTC
+CTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGGCCCCCGGACCCCCAGGCTTGCTGGACG
+GGACGGCAGACGATGCCACGACGGTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTCCTGTG
+CCGCACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCACCGTGGCCCCAGGCGTCT
+CTACTGGGGGCTACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAGTGTGGGGG
+GCCACCTCTGTGGGACCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTGGGGACGCT
+GTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCTTGCTGTCCTCCTGGAGTGCCTCGAGAGC
+CCCGGCTCCAGCCCCACGGTTCTGAAGAAGGCCTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTCACCCA
+AGACCCCCGGCTGCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCTGTGCTGCA
+GAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGCCCTCGAGTTCCTGACCCAGCTGAGCAGG
+CACTGGGGAGGACAGGCTGACTTCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCTGCAGC
+TCCTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGGGCAGCTGTCCAGCCAGGG
+CCTGCACGCCCCCACCAGCCCTGAGCATGCAGAGGCCCGGCAGATGGGTAAACTGAGGATTGGAGGGCCG
+TGTGCTCACTGCGCAGCATGGGAAGGTGTCAGAGCGGGCTGTGGCCCTAGACTGCATGTCCGGGGCCAGC
+CCCCATCATGTACCGGAGTCCTGTTGCGGGAGCCTCGCTCCTGCCACCCCACCAACCATCCGCACTTGCT
+CCCTGTCCCCCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTAGACTCGGAGGGCTTCCCACGG
+CGGGCGGTCATGCAAGTCTTCACTGAGTGGCTGCGGGACGGCCACGCCGACGCGGCCCAGGACACGGAGC
+AGTTCGTGGCCACTGTGCTGCAGGCGGCGAGCCGAGACCTGGACTGGGAGGTCCGCGCCCAGGGCCTGGA
+GCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCCGCGTACCCACTGCCCCTATGCCGTGGCCCTA
+CCCGAGGTGGCCCCAGCCCAGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTTTGACT
+TCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTCTTGTGACCTCCTTCTCTTCCT
+GAGGGACAAGATTGCTTCCTACAGCAGCCTGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCGCAGAG
+GCCACCCTGCCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCCTGAGGCTGTGC
+TGGCCATGCTCAGGTCCCTAGACCTGGAGGGCCTGCGGAGCACGCTGGCCGAGAGCAGCGACCACGTGGA
+AAAGAGTCCCCAGTCCCTCCTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGGCCGAC
+TGCTACTGAGCAGAACCAGAGTCTGCCACTGGGGCTCAGGACCAAGGGAGGCAGCACCATGTCCTTCTGT
+GGGACACTGCCAGCCCCAGGGCTCCAGCCCAGCCCGGTGGATCCTCTGGGGAAGCCAGGACCAGGAGAGA
+AGCAAGGTCAAGAAATCCCACAGTTTGATGTATTAAAGAAATGACTTATTTCTACTCAAAATAAATGGCA
+TTGAAGTCTTTCTTTAA
+>gi|530373237|ref|XM_005265508.1| PREDICTED: Homo sapiens BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) (BAP1), transcript variant X2, mRNA
+GCATGCCCGCATCTGCTGTCCGACAGGCGGAAGACGAGCCCAGAGGCGGAGCAGGGCCGTCGCGCCTTGG
+TGACGTCTGCCGCCGGCGCGGGCGGGTGACGCGACTGGGCCCGTTGTCTGTGTGTGGGACTGAGGGGCCC
+CGGGGGCGGTGGGGGCTCCCGGTGGGGGCAGCGGTGGGGAGGGAGGGCCTGGACATGGCGCTGAGGGGCC
+GCCCCGCGGGAAGATGAATAAGGGCTGGCTGGAGCTGGAGAGCGACCCAGGCCTCTTCACCCTGCTCGTG
+GAAGATTTCGGTGTCAAGGGGGTGCAAGTGGAGGAGATCTACGACCTTCAGAGCAAATGTCAGGGCCCTG
+TATATGGATTTATCTTCCTGTTCAAATGGATCGAAGAGCGCCGGTCCCGGCGAAAGGTCTCTACCTTGGT
+GGATGATACGTCCGTGATTGATGATGATATTGTGAATAACATGTTCTTTGCCCACCAGCTGATACCCAAC
+TCTTGTGCAACTCATGCCTTGCTGAGCGTGCTCCTGAACTGCAGCAGCGTGGACCTGGGACCCACCCTGA
+GTCGCATGAAGGACTTCACCAAGGGTTTCAGCCCTGAGAGCAAAGGATATGCGATTGGCAATGCCCCGGA
+GTTGGCCAAGGCCCATAATAGCCATGCCAGGCCCGAGCCACGCCACCTCCCTGAGAAGCAGAATGGCCTT
+AGTGCAGTGCGGACCATGGAGGCGTTCCACTTTGTCAGCTATGTGCCTATCACAGGCCGGCTCTTTGAGC
+TGGATGGGCTGAAGGTCTACCCCATTGACCATGGGCCCTGGGGGGAGGACGAGGAGTGGACAGACAAGGC
+CCGGCGGGTCATCATGGAGCGTATCGGCCTCGCCACTGCAGGGATCAAGTATGAGGCCAGGCTGCATGTG
+CTGAAGGTGAACCGTCAGACAGTACTAGAGGCTCTGCAGCAGCTGATAAGAGTAACACAGCCAGAGCTGA
+TTCAGACCCACAAGTCTCAAGAGTCACAGCTGCCTGAGGAGTCCAAGTCAGCCAGCAACAAGTCCCCGCT
+GGTGCTGGAAGCAAACAGGGCCCCTGCAGCCTCTGAGGGCAACCACACAGATGGTGCAGAGGAGGCGGCT
+GGTTCATGCGCACAAGCCCCATCCCACAGCCCTCCCAACAAACCCAAGCTAGTGGTGAAGCCTCCAGGCA
+GCAGCCTCAATGGGGTTCACCCCAACCCCACTCCCATTGTCCAGCGGCTGCCGGCCTTTCTAGACAATCA
+CAATTATGCCAAGTCCCCCATGCAGGAGGAAGAAGACCTGGCGGCAGGTGTGGGCCGCAGCCGAGTTCCA
+GTCCGCCCACCCCAGCAGTACTCAGATGATGAGGATGACTATGAGGATGACGAGGAGGATGACGTGCAGA
+ACACCAACTCTGCCCTTAGGTATAAGGGGAAGGGAACAGGGAAGCCAGGGGCATTGAGCGGTTCTGCTGA
+TGGGCAACTGTCAGTGCTGCAGCCCAACACCATCAACGTCTTGGCTGAGAAGCTCAAAGAGTCCCAGAAG
+GACCTCTCAATTCCTCTGTCCATCAAGACTAGCAGCGGGGCTGGGAGTCCGGCTGTGGCAGTGCCCACAC
+ACTCGCAGCCCTCACCCACCCCCAGCAATGAGAGTACAGACACGGCCTCTGAGATCGGCAGTGCTTTCAA
+CTCGCCACTGCGCTCGCCTATCCGCTCAGCCAACCCGACGCGGCCCTCCAGCCCTGTCACCTCCCACATC
+TCCAAGGTGCTTTTTGGAGAGGATGACAGCCTGCTGCGTGTTGACTGCATACGCTACAACCGTGCTGTCC
+GTGATCTGGGTCCTGTCATCAGCACAGGCCTGCTGCACCTGGCTGAGGATGGGGTGCTGAGTCCCCTGGC
+GCTGACAGAGGGTGGGAAGGGTTCCTCGCCCTCCATCAGACCAATCCAAGGCAGCCAGGGGTCCAGCAGC
+CCAGTGGAGAAGGAGGTCGTGGAAGCCACGGACAGCAGAGAGAAGACGGGGATGGTGAGGCCTGGCGAGC
+CCTTGAGTGGGGAGAAATACTCACCCAAGCTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGA
+TCAGAGGTGCAATGCTGGGTTTTGGCAGGAGCTGCTGGCACTGCTGAAGTGTGTGGAGGCTGAGATTGCA
+AACTATGAGGCGTGCCTCAAGGAGGAGGTAGAGAAGAGGAAGAAGTTCAAGATTGATGACCAGAGAAGGA
+CCCACAACTACGATGAGTTCATCTGCACCTTTATCTCCATGCTGGCTCAGGAAGGCATGCTGGCCAACCT
+AGTGGAGCAGAACATCTCCGTGCGGCGGCGCCAAGGGGTCAGCATCGGCCGGCTCCACAAGCAGCGGAAG
+CCTGACCGGCGGAAACGCTCTCGCCCCTACAAGGCCAAGCGCCAGTGAGGACTGCTGGCCCTGACTCTGC
+AGCCCACTCTTGCCGTGTGGCCCTCACCAGGGTCCTTCCCTGCCCCACTTCCCCTTTTCCCAGTATTACT
+GAATAGTCCCAGCTGGAGAGTCCAGGCCCTGGGAATGGGAGGAACCAGGCCACATTCCTTCCATCGTGCC
+CTGAGGCCTGACACGGCAGATCAGCCCCATAGTGCTCAGGAGGCAGCATCTGGAGTTGGGGCACAGCGAG
+GTACTGCAGCTTCCTCCACAGCCGGCTGTGGAGCAGCAGGACCTGGCCCTTCTGCCTGGGCAGCAGAATA
+TATATTTTACCTATCAGAGACATCTATTTTTCTGGGCTCCAACCCAACATGCCACCATGTTGAC
+>gi|530373235|ref|XM_005265507.1| PREDICTED: Homo sapiens BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) (BAP1), transcript variant X1, mRNA
+GCATGCCCGCATCTGCTGTCCGACAGGCGGAAGACGAGCCCAGAGGCGGAGCAGGGCCGTCGCGCCTTGG
+TGACGTCTGCCGCCGGCGCGGGCGGGTGACGCGACTGGGCCCGTTGTCTGTGTGTGGGACTGAGGGGCCC
+CGGGGGCGGTGGGGGCTCCCGGTGGGGGCAGCGGTGGGGAGGGAGGGCCTGGACATGGCGCTGAGGGGCC
+GCCCCGCGGGAAGATGAATAAGGGCTGGCTGGAGCTGGAGAGCGACCCAGGCCTCTTCACCCTGCTCGTG
+GAAGATTTCGGTGTCAAGGGGGTGCAAGTGGAGGAGATCTACGACCTTCAGAGCAAATGTCAGGGCCCTG
+TATATGGATTTATCTTCCTGTTCAAATGGATCGAAGAGCGCCGGTCCCGGCGAAAGGTCTCTACCTTGGT
+GGATGATACGTCCGTGATTGATGATGATATTGTGAATAACATGTTCTTTGCCCACCAGCTGATACCCAAC
+TCTTGTGCAACTCATGCCTTGCTGAGCGTGCTCCTGAACTGCAGCAGCGTGGACCTGGGACCCACCCTGA
+GTCGCATGAAGGACTTCACCAAGGGTTTCAGCCCTGAGAGCAAAGGATATGCGATTGGCAATGCCCCGGA
+GTTGGCCAAGGCCCATAATAGCCATGCCAGGCCCGAGCCACGCCACCTCCCTGAGAAGCAGAATGGCCTT
+AGTGCAGTGCGGACCATGGAGGCGTTCCACTTTGTCAGCTATGTGCCTATCACAGGCCGGCTCTTTGAGC
+TGGATGGGCTGAAGGTCTACCCCATTGACCATGGGCCCTGGGGGGAGGACGAGGAGTGGACAGACAAGGC
+CCGGCGGGTCATCATGGAGCGTATCGGCCTCGCCACTGCAGGGGAGCCCTACCACGACATCCGCTTCAAC
+CTGATGGCAGTGGTGCCCGACCGCAGGATCAAGTATGAGGCCAGGCTGCATGTGCTGAAGGTGAACCGTC
+AGACAGTACTAGAGGCTCTGCAGCAGCTGATAAGAGTAACACAGCCAGAGCTGATTCAGACCCACAAGTC
+TCAAGAGTCACAGCTGCCTGAGGAGTCCAAGTCAGCCAGCAACAAGTCCCCGCTGGTGCTGGAAGCAAAC
+AGGGCCCCTGCAGCCTCTGAGGGCAACCACACAGATGGTGCAGAGGAGGCGGCTGGTTCATGCGCACAAG
+CCCCATCCCACAGCCCTCCCAACAAACCCAAGCTAGTGGTGAAGCCTCCAGGCAGCAGCCTCAATGGGGT
+TCACCCCAACCCCACTCCCATTGTCCAGCGGCTGCCGGCCTTTCTAGACAATCACAATTATGCCAAGTCC
+CCCATGCAGGAGGAAGAAGACCTGGCGGCAGGTGTGGGCCGCAGCCGAGTTCCAGTCCGCCCACCCCAGC
+AGTACTCAGATGATGAGGATGACTATGAGGATGACGAGGAGGATGACGTGCAGAACACCAACTCTGCCCT
+TAGGTATAAGGGGAAGGGAACAGGGAAGCCAGGGGCATTGAGCGGTTCTGCTGATGGGCAACTGTCAGTG
+CTGCAGCCCAACACCATCAACGTCTTGGCTGAGAAGCTCAAAGAGTCCCAGAAGGACCTCTCAATTCCTC
+TGTCCATCAAGACTAGCAGCGGGGCTGGGAGTCCGGCTGTGGCAGTGCCCACACACTCGCAGCCCTCACC
+CACCCCCAGCAATGAGAGTACAGACACGGCCTCTGAGATCGGCAGTGCTTTCAACTCGCCACTGCGCTCG
+CCTATCCGCTCAGCCAACCCGACGCGGCCCTCCAGCCCTGTCACCTCCCACATCTCCAAGGTGCTTTTTG
+GAGAGGATGACAGCCTGCTGCGTGTTGACTGCATACGCTACAACCGTGCTGTCCGTGATCTGGGTCCTGT
+CATCAGCACAGGCCTGCTGCACCTGGCTGAGGATGGGGTGCTGAGTCCCCTGGCGCTGACAGAGGGTGGG
+AAGGGTTCCTCGCCCTCCATCAGACCAATCCAAGGCAGCCAGGGGTCCAGCAGCCCAGTGGAGAAGGAGG
+TCGTGGAAGCCACGGACAGCAGAGAGAAGACGGGGATGGTGAGGCCTGGCGAGCCCTTGAGTGGGGAGAA
+ATACTCACCCAAGCTGCCTATTGCTCGTGGGGCTTTGTTGCTGGCCCGCCCCGATCAGAGGTGCAATGCT
+GGGTTTTGGCAGGAGCTGCTGGCACTGCTGAAGTGTGTGGAGGCTGAGATTGCAAACTATGAGGCGTGCC
+TCAAGGAGGAGGTAGAGAAGAGGAAGAAGTTCAAGATTGATGACCAGAGAAGGACCCACAACTACGATGA
+GTTCATCTGCACCTTTATCTCCATGCTGGCTCAGGAAGGCATGCTGGCCAACCTAGTGGAGCAGAACATC
+TCCGTGCGGCGGCGCCAAGGGGTCAGCATCGGCCGGCTCCACAAGCAGCGGAAGCCTGACCGGCGGAAAC
+GCTCTCGCCCCTACAAGGCCAAGCGCCAGTGAGGACTGCTGGCCCTGACTCTGCAGCCCACTCTTGCCGT
+GTGGCCCTCACCAGGGTCCTTCCCTGCCCCACTTCCCCTTTTCCCAGTATTACTGAATAGTCCCAGCTGG
+AGAGTCCAGGCCCTGGGAATGGGAGGAACCAGGCCACATTCCTTCCATCGTGCCCTGAGGCCTGACACGG
+CAGATCAGCCCCATAGTGCTCAGGAGGCAGCATCTGGAGTTGGGGCACAGCGAGGTACTGCAGCTTCCTC
+CACAGCCGGCTGTGGAGCAGCAGGACCTGGCCCTTCTGCCTGGGCAGCAGAATATATATTTTACCTATCA
+GAGACATCTATTTTTCTGGGCTCCAACCCAACATGCCACCATGTTGAC
+>gi|530364726|ref|XR_241081.1| PREDICTED: Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant X4, misc_RNA
+GTGTGGGAGGCCGGAAGTTGCGGCTTCATTACTCGCCATTTCAAAATGCTGCCGAGGCCCTAGGATCTGT
+GACTGCCACCCCTCCCCCCACCCGGGCTCGGCGGGGGAGCGACTCATGGAGCTGCCGTAAGTTTTACCAA
+CAGACTGCAGTTTCTTCACTACCAAAATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAG
+TGCTTGCAGGATCTCTCCTGGACAAATCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCAT
+GCAGCAGGTGCGCAAGGTGAAATGTTCACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGG
+TGAAGCAACTTTATGATCAGCAGGAGCAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACT
+GGGACGTCAGAGCTTCTCCGTGAAAGACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACT
+TTAGCCACTGCTACTACAGCAAAGTGCAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGAT
+ATCCCCACACTGCCTACCTCAGAGCATAAATGCATACATTCTAGAGAAGATGAAGACTTAATTGAAAATT
+TAGCCCAAGATGAAACATCTAGGCTGGACCTTGGATTTGAGGAGTGGGATGTAGCTGGCCTGCCTTGGTG
+GTTTTTAGGAAACTTGAGAAGCAACTATACACCTAGAAGTAATGGCTCAACTGATTTACAGACAAATCAG
+GTGATTGAAGTGGGAAAAAATGATGACCTGGAGGACTCTAAGTCCTTAAGTGATGATACCGATGTAGAGG
+TTACCTCTGAGGATGAGTGGCAGTGTACTGAATGCAAGAAATTTAACTCTCCAAGCAAGAGGTACTGTTT
+TCGTTGTTGGGCCTTGAGGAAGGATTGGTATTCAGATTGTTCAAAGTTAACCCATTCTCTCTCCACGTCT
+GATATCACTGCCATACCTGAAAAGGAAAA
+>gi|530364725|ref|XR_241080.1| PREDICTED: Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant X3, misc_RNA
+GTGTGGGAGGCCGGAAGTTGCGGCTTCATTACTCGCCATTTCAAAATGCTGCCGAGGCCCTAGGATCTGT
+GACTGCCACCCCTCCCCCCACCCGGGCTCGGCGGGGGAGCGACTCATGGAGCTGCCGTAAGTTTTACCAA
+CAGACTGCAGTTTCTTCACTACCAAAATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAG
+TGCTTGCAGGATCTCTCCTGGACAAATCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCAT
+GCAGCAGGTGCGCAAGGTGAAATGTTCACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGG
+TGAAGCAACTTTATGATCAGCAGGAGCAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACT
+GGGACGTCAGAGCTTCTCCGTGAAAGACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACT
+TTAGCCACTGCTACTACAGCAAAGTGCAGAGGAAAGTTCCACTTCCAGAAAAAGAACTACAGAAGACGAT
+ATCCCCACACTGCCTACCTCAGAGCATAAATGCATACATTCTAGAGAAGATGAAGACTTAATTGAAAATT
+TAGCCCAAGATGAAACATCTAGGCTGGACCTTGGATTTGAGGAGTGGGATGTAGCTGGCCTGCCTTGGTG
+GTTTTTAGGAAACTTGAGAAGCAACTATACACCTAGAAGTAATGGCTCAACTGATTTACAGACAAATCAG
+GATGTGGGTACTGCCATTGTTTCAGATACTACAGATGACTTGTGGTTTTTGAATGAGTCAGTATCAGAGC
+AGTTAGGTGTTGGAATAAAAGTTGAAGCTGCTGATACTGAACAAACAAGTGAAGAAGTAGGGAAAGTAAG
+TGACAAAAAGGTGATTGAAGTGGGAAAAAATGATGACCTGGAGGACTCTAAGTCCTTAAGTGATGATACC
+GATGTAGAGGTTACCTCTGAGGATGAGTGGCAGTGTACTGAATGCAAGAAATTTAACTCTCCAAGCAAGA
+GGTACTGTTTTCGTTGTTGGGCCTTGAGGAAGGATTGGTATTCAGATTGTTCAAAGTTAACCCATTCTCT
+CTCCACGTCTGATATCACTGCCATACCTGAAAAGGAAAATGAAGGAAATGATGTCCCTGATTGTCGAAGA
+ACCATTTCGGCTCCTGTCGTTAGACCTAAAGATGCGTATATAAAGAAAGAAAACTCCAAACTTTTTGATC
+CCTGCAACTCAGTGGAATTCTTGGATTTGGCTCACAGTTCTGAAAGCCAAGAGACCATCTCAAGCATGGG
+AGAACAGTTAGATAACCTTTCTGAACAGAGAACAGATACAGAAAACATGGAGGATTGCCAGAATCTCTTG
+AAGCCATGTAGCTTATGTGAGAAAAGACCACGAGACGGGAACATTATTCATGGAAGGACGGGCCATCTTG
+TCACTTGTTTTCACTGTGCCAGAAGACTAAAGAAGGCTGGGGCTTCATGCCCTATTTGCAAGAAAGAGAT
+TCAGCTGGATGCCAAAGAAGAGTGAATGGCCCACAAAGAGCCTGGTAGCACATACGCTTTTCAAAAGGTC
+ATGCACTTACAGCTAAAGCCATTAAGGCTGAAGTGCAGTGGCGAGAGGTTCACGGCAGCCTTGACCTCCT
+GGCTGAAGCGATCCAGCCATCTCAGCCCCCCGAGTAGCTGAGACCACAGGAGGGGGCTGATTGAAACTGA
+AGAATAGTACAGTAGGAGGAGAGGACCAGGAGCTGAAAAGACAGGTCGCTATGTTGAGAGAGAGAGAGAG
+GAAGAAAGATCTAATAGGACTTCAAAGGCTGTGGTAGATGTATTACTGTCAAAACCTGCGCAGCTTTTCT
+CTACCAGGCCTTGGAAAAGATTGCACTTCCTGCACCACTGGCAGCGGGCTGGCCAATGGGATGCAAGTGG
+AAATGAACTGTGCTATTCTGAGCAGAGGCTTAGGGACCATTGTGTGGGCTTAGGCAGATACTCCAATATT
+TCTGACACATACATACACGGAAAACCTTGCAAGAGTGGAGAAAAGAAGGGAGAGGGTCTCACTCTGTCAC
+CAGGCTGGAGTGCAGTGGCACAATCTAGGCTCACTGCAGCCTCGACCTCCCAGGTTCAAGCAATCCTCCC
+ACCTCAGCCTCCCGGTTAGCTGGGACTATAGCTATGCGCCACCATGTCCCTATGTTGCCCAGCCTCGGTG
+TCTGGATGCCCAGCCTAACCAAGTCAGCTTCCCATCTTTGGCTGAGACAAGGAGAACCCTGCTGGGCTAG
+GGGACCCAGATAGTGACCAGGTTCTGCATGTGATTTCCCTGTGGAATTCCAACCAAGGACAGACAGTTAG
+CCTAAAAACAACAGCAGAAGCAGCAGCAACAACGATGCTGAGTGCTGACTGCGAGCCTGGCTTCCTCGGA
+GGGAGTTTACCGTGCGCTGCCTCCTTGGACCCTCATCACTGCCCTGCGAAGCAAGCACTTTCCTCACCCC
+CTCTGTCTGGAGGAGGGCACTGAGGCACCGAGAAAACTGGGCAGGGGAGGCCCGAGAAGGAGAGGGTGGC
+ACCGTCATTCTCACTTTCCAGCTGAGGACACGGATGGTTTCTATAACAGTGAATTTGCAAATAGTTGGAA
+CCTCTGAAGTGCTTCCTCTCCTGGACTGGAAACCCCTTGAGGATGTGTACGGCACCCGCATCCCCTCCAT
+CTGCACCCGCAGCCACAGCCACAGCCACAGCCAGCGCTATGTCCCGTTGCCATTCACATTCATACCTGCA
+ACGTACACTCATACATGTGTCGGATATTTGCGAAGAAGCTCCCTTTCCCACCTAGGCCCCTCTTCTTTCC
+TTTCCTTTCCTTTCCCTCCTCTACCTCTTTCCCTTCCTATTCTTCTGCTCCTCCTCCCTCCCAGCTGGTT
+CCCTATTTCCCTTACCCCCTCAAACATCTCCCCTCTCTCCATCCCCACTCCCAATCTGCCAAACCCACCC
+CCACCTAAAAATGTGGACCGTGGAGTCTCTGACCGAGGTTTCCTTTCCCAACATGGGGAGCCCGGGCTGG
+CTGCGATTTGTTGGGGACAGAGATGGGATCTTGCTCTGTTGTTCAGGTGGTGGTTTCAAACTCCTGGCCT
+CAAGTGATCCTCCTGCCTTGGCCTCCCAAAGCGCTGGGATTACAGGTGTGAGCCGCTGTGCCCAGGCCAA
+TCCCAGAGATTTTGTTTTATTTTATGGCCCAGAAGATGATTTCTCGATACGAGTTTCACGAAGACTTGAA
+AAGAATGTGTCCTCTGTTGTTGGATGGAGTGTCCTTGAAATGTTCATTAGCCTTCTAGCTCCATTCAGAA
+GAGCCTCCGAAGTAGAGACCAGAAATCCTTCTAGTGGGCTGTGCTTTGAGCAGTACTGCTTGTTGACTGC
+TTTACTTGGAAGGAGAGATCGACTGAGAATGTATAACATCAAGAGCTGCCCTAATGTGAACTGGAGACTT
+CGAGTGACAACAATGTGCCCATGGAAAGAAGTGGACAAGACTCTGCTCTCTTCATGGAACCGAGTATTCT
+AAGGACACAGCCAAGTCAGGAGACTACACCCCTAGTATAATAAGTCCTGTGGCTGTACTGAGAAGAGGTC
+CTGACTCAGAACTGGAGGACATCATGGAAGGCTTCCTGGAGGAAGTGCCATCTAGGCTGAAACCTAAAGG
+ATGAGTAGAACTAACCAGATGAAAAGGACAGCACTGGATTTGACTCATCCCTGCATCCCCCGAGCACCTC
+GTGGGTGCCGTAAAGGCAGCTGGGTTGATGATGACTGAGTGAAGGAGCGCCTGAGTGGATGAGCCACTGA
+GTGAATGAACTGGAGTTCATCTTCCACGTGGTCCTCAGCATCCACTCTAGAAGCCAAAGCCAAGCCTGAG
+GGATCTAAAGCCTTGGGACTTCTGGATCTGCAAGTGGTCCCTGTTTTGGTAGCTATTGACTGACGAGGGG
+CTCTTCGCCCCACAGGTGACTGCTGTAGCCTTGAGTGAGGACCTCGGCCAAAAAGAAGGCTCCTACCGTG
+GCTGTTTGCTGATGGTCTTCGCAGAGCCTGCTGTCTTTGAGCTTCCTGAGAGAGGGACACTACCCTCGCT
+TAGCCTGGCAGTGTTGCCCAGGAGGAGGCAGTGGAGTTAAGAAGCCTGGGTCTGAGCTCCTCAGCTGTGC
+AGACAACTCCTACTTGTTCTTCAACGCTCAACTTTAAGTTCAGTCACCACCTGCAGAAGTCTTCTCCAAA
+ACCTCCCCACCTGGCTGACTAAGGGGCTGGCTTTATGCTCTTGCAGTACTCATGCTTCCTACTGTCACAG
+TTCTGACCACACCGTGGGAAAACGTCTCTAACTAGAGACCTGTCTTGCCTCTTGTGCCTGTAGTACGGGA
+TGGGTGCCCAGTGTGTGTTGATTGTATGAATCAATCTCTGTGACTCCAGAGTTCCTTTCTTCAGGAGATT
+AGACATCACCCCTGCAATCAACAATGCAAGCCACTGCTGTTTCCTCCATCCTGAGCATGAGGAACCTATC
+CAGTTTCTCTCTCAGATGCCAGGGCCATGAGGCAAGTCCAGCCTTGGCCTAGAACCAAAGATGGAAACAA
+AAAGGGGCCAGACTGTGTTGCCTTCTTGAGCCTGGTCTGACTCCTGAGTGGAAGTCTGATTCCAGGTACA
+TGAGATAAGCACTAATACCTCCAGTTTGCAGATTAAGAGACTGAGGTCCTGAAGAGGTTAAAGAACTTGG
+CTCAAGTCACATAGCTGGTGAGCAGCAAGATACAAGAATCAACCCAAGTCCAGGGGGCTGTGTGCCGTTT
+ACACTTCACATCTGTGCTGCCAGGGCTGTAGCTATAAAAGCTTGAAAACCATTA
+>gi|530364724|ref|XR_241079.1| PREDICTED: Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant X2, misc_RNA
+AAGTTGCGGCTTCATTACTCGCCATTTCAAAATGCTGCCGAGGCCCTAGGATCTGTGACTGCCACCCCTC
+CCCCCACCCGGGCTCGGCGGGGGAGCGACTCATGGAGCTGCCGTAAGTTTTACCAACAGACTGCAGTTTC
+TTCACTACCAAAATGACATCATTTTCCACCTCTGCTCAGTGTTCAACATCTGACAGTGCTTGCAGGATCT
+CTCCTGGACAAATCAATCAGGTACGACCAAAACTGCCGCTTTTGAAGATTTTGCATGCAGCAGGTGCGCA
+AGGTGAAATGTTCACTGTTAAAGAGGTCATGCACTATTTAGGTCAGTACATAATGGTGAAGCAACTTTAT
+GATCAGCAGGAGCAGCATATGGTATATTGTGGTGGAGATCTTTTGGGAGAACTACTGGGACGTCAGAGCT
+TCTCCGTGAAAGACCCAAGCCCTCTCTATGATATGCTAAGAAAGAATCTTGTCACTTTAGCCACTGCTAC
+TACAGGATCACAGTATGGATATTCCAAGTCAAGACCAACTGAAGCAAAGTGCAGAGGAAAGTTCCACTTC
+CAGAAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCTCAGAGCATAAATGCATACATTCTAGA
+GAAGATGAAGACTTAATTGAAAATTTAGCCCAAGATGAAACATCTAGGCTGGACCTTGGATTTGAGGAGT
+GGGATGTAGCTGGCCTGCCTTGGTGGTTTTTAGGAAACTTGAGAAGCAACTATACACCTAGAAGTAATGG
+CTCAACTGATTTACAGACAAATCAGGATGTGGGTACTGCCATTGTTTCAGATACTACAGATGACTTGTGG
+TTTTTGAATGAGTCAGTATCAGAGCAGTTAGGTGTTGGAATAAAAGTTGAAGCTGCTGATACTGAACAAA
+CAAGTGAAGAAGTAGGGAAAGTAAGTGACAAAAAGGTGATTGAAGTGGGAAAAAATGATGACCTGGAGGA
+CTCTAAGTCCTTAAGTGATGATACCGATGTAGAGGTTACCTCTGAGGATGAGTGGCAGTGTACTGAATGC
+AAGAAATTTAACTCTCCAAGCAAGAGGTACTGTTTTCGTTGTTGGGCCTTGAGGAAGGATTGGTATTCAG
+ATTGTTCAAAGTTAACCCATTCTCTCTCCACGTCTGATATCACTGCCATACCTGAAAAGGAAAATGAAGG
+AAATGATGTCCCTGATTGTCGAAGAACCATTTCGGCTCCTGTCGTTAGACCTAAAGATGCGTATATAAAG
+AAAGAAAACTCCAAACTTTTTGATCCCTGCAACTCAGTGGAATTCTTGGATTTGGCTCACAGTTCTGAAA
+GCCAAGAGACCATCTCAAGCATGGGAGAACAGTTAGATAACCTTTCTGAACAGAGAACAGATACAGAAAA
+CATGGAGGATTGCCAGAATCTCTTGAAGCCATGTAGCTTATGTGAGAAAAGACCACGAGACGGGAACATT
+ATTCATGGAAGGACGGGCCATCTTGTCACTTGTTTTCACTGTGCCAGAAGACTAAAGAAGGCTGGGGCTT
+CATGCCCTATTTGCAAGAAAGAGATTCAGCTGGTTATTAAGGTTTTTATAGCATAATGGTAGTACGAACA
+TAAAAATGCATTTATTCCGTTCACTTACCACATTATTTGAAAATCAATCCTTTATTTAATTTTATTTCCA
+ACCTGTCAGAGAATGTTCTTAGGCATCAAAATCCAAGGTAGCTGTAAGAAAAATACTGGAGCTAACAATG
+AAGAACAGAAGTAATCTGATTAGTCAAATTATTAAGTGCCATGGATTACTTTATGCAGCAGTCAGGTACA
+TAGTTAGGTGAACCCAAAAGAAAAACTCTTGAAAACAAGAGATTTCTTCCATGCACATTTACAATATTGA
+GGTATAATTAACATGATAAAGTGTTTCCTTCTAACGAGTTGTAGAAATCTGAGTAACCACCCAAAAAAGC
+AATAGAATGTTTCTGTCACCCCAAAACACTCCCTTCTGCCCCTCTTCAGACAGTCCTTCAGCTATTTCAT
+GGCTCTCACCCTAGTTTTTTTTTTTTTTGCACTTTTTTTTTTCCGGGGGTATAGGGGAGGTGTGGGGCGA
+CAGGGTCTGTCTTGTTCTGTCTCCCAGGCTGAAGTGCAGTGCAGTGGTATGATCATGGCTCACTGCAGCC
+TTGGTTTCCTGGGCATAAGTGGTCTTCCCACTTCAGCCTCCTGAGTAGCTGAGACTATAGACTAGCATAA
+CCACACTGGCTAATTTTTTGTGGAGATGAAGTCTCACTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGC
+TCAAACAATCCTCCCGCCTCAGCCTTCCAAATTGCTGGGATTATAGTCATGAGGCACCTAGTCTGGCCCT
+TTTGCAAGACTTTAATCTGAAATCTAAATTTTTAAAATTTAAGTACTTACAAAGGATATACTATCCAACA
+TATTGCATATTATATATGTGCTTTAAAGTTTTTTTTTTTTTTTGAGAGACGGTCTCACTTTGTCATCCAA
+GCTGGAGTGCAGTGGTGCAAACACGGCCCACCTCCTGGGCTCAAGTGATCCTCCAGCCTCAGCTTCCCTC
+ACAGGCATTCACTATCACTCCCAGCTAATTAAAATAATTTGTAGACGGTGTCTCGTTATGTTGCCCAGGC
+TGGTCTCGAACTCCTGGGTTTAAGTGATTCCCCCGCCTCAGCCTCCCAAAGTGTTGGGCTTACAGCCTTG
+AGCCACTATGCTTGGCTCAAAGATATTTTTATGAAAGCCCTGGGACTATAGATTTAGCTGATTAAATTTA
+TAGAAAAAGTCCTGTCATA
=====================================
tests/test_faidx.py
=====================================
@@ -50,3 +50,11 @@ class TestCLI(TestCase):
print(noto_strand.read())
self.assertTrue(filecmp.cmp(auto_strand.name, noto_strand.name))
+ def test_regexp(self):
+ main(['data/genes.fasta', '-g', 'XR'])
+
+ def test_not_regexp(self):
+ main(['data/genes.fasta', '-g', 'XR','-v'])
+
+ def test_not_regexp_multi(self):
+ main(['data/genes.fasta', '-g', 'XR', '-g', 'XM', '-v'])
=====================================
tests/test_feature_indexing.py
=====================================
@@ -55,6 +55,33 @@ class TestIndexing(TestCase):
result_index = open(index_file).read()
assert result_index == expect_index
+ def test_build_issue_141(self):
+ expect_index = ("gi|563317589|dbj|AB821309.1| 3510 115 70 72\n"
+ "gi|557361099|gb|KF435150.1| 481 3842 70 72\n"
+ "gi|557361097|gb|KF435149.1| 642 4429 70 72\n"
+ "gi|543583796|ref|NR_104216.1| 4573 5213 70 72\n"
+ "gi|543583795|ref|NR_104215.1| 5317 10040 70 72\n"
+ "gi|543583794|ref|NR_104212.1| 5374 15631 70 72\n"
+ "gi|543583788|ref|NM_001282545.1| 4170 21274 70 72\n"
+ "gi|543583786|ref|NM_001282543.1| 5466 25679 70 72\n"
+ "gi|543583785|ref|NM_000465.3| 5523 31415 70 72\n"
+ "gi|543583740|ref|NM_001282549.1| 3984 37211 70 72\n"
+ "gi|543583738|ref|NM_001282548.1| 4113 41424 70 72\n"
+ "gi|530384540|ref|XM_005249645.1| 2752 45784 70 72\n"
+ "gi|530384538|ref|XM_005249644.1| 3004 48745 70 72\n"
+ "gi|530384536|ref|XM_005249643.1| 3109 51964 70 72\n"
+ "gi|530384534|ref|XM_005249642.1| 3097 55292 70 72\n"
+ "gi|530373237|ref|XM_005265508.1| 2794 58640 70 72\n"
+ "gi|530373235|ref|XM_005265507.1| 2848 61675 70 72\n"
+ "gi|530364726|ref|XR_241081.1| 1009 64742 70 72\n"
+ "gi|530364725|ref|XR_241080.1| 4884 65918 70 72\n"
+ "gi|530364724|ref|XR_241079.1| 2819 71079 70 72\n")
+ index_file = Faidx('data/issue_141.fasta').indexname
+ result_index = open(index_file).read()
+ os.remove('data/issue_141.fasta.fai')
+ print(result_index)
+ assert result_index == expect_index
+
def test_build_issue_111(self):
expect_index = ("gi|563317589|dbj|AB821309 3510 114 70 71\n"
"gi|557361099|gb|KF435150 481 3789 70 71\n"
@@ -295,3 +322,18 @@ class TestIndexing(TestCase):
""" Ensure that index file is not built when build_index=False. See mdshw5/pyfaidx#134.
"""
faidx = Faidx('data/genes.fasta', build_index=False)
+
+ @raises(FastaIndexingError)
+ def test_issue_144_no_defline(self):
+ """ Ensure that an exception is raised when a file contains no deflines. See mdshw5/pyfaidx#144.
+ """
+ tmp_dir = mkdtemp()
+ try:
+ fasta_path = os.path.join(tmp_dir, 'issue_144.fasta')
+ # Write simple fasta file
+ with open(fasta_path, 'w') as fasta_out:
+ fasta_out.write("CTCCGGGCCCAT\nATAAAGCCTAAA\n")
+ faidx = Faidx(fasta_path)
+ finally:
+ shutil.rmtree(tmp_dir)
+
View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/commit/d7f40c07329fa2f5eede132efe030d050a4f5d34
--
View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/commit/d7f40c07329fa2f5eede132efe030d050a4f5d34
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