[med-svn] [Git][med-team/bioperl][master] 9 commits: debhelper 11

Sat Oct 27 23:52:27 BST 2018

Andreas Tille pushed to branch master at Debian Med / bioperl


Commits:
26d7b933 by Andreas Tille at 2018-10-27T16:01:56Z
debhelper 11

- - - - -
20243d3e by Andreas Tille at 2018-10-27T16:02:14Z
Point Vcs fields to salsa.debian.org

- - - - -
9f2bdf29 by Andreas Tille at 2018-10-27T16:02:14Z
Standards-Version: 4.2.1

- - - - -
2ba3b4bd by Andreas Tille at 2018-10-27T16:02:14Z
Remove trailing whitespace in debian/changelog

- - - - -
17b4cfd4 by Andreas Tille at 2018-10-27T16:02:14Z
Remove trailing whitespace in debian/copyright

- - - - -
b61ad219 by Andreas Tille at 2018-10-27T16:02:14Z
Remove trailing whitespace in debian/rules

- - - - -
0ae27211 by Andreas Tille at 2018-10-27T22:38:50Z
Fix Perl interpreter path

- - - - -
bc4e7d04 by Andreas Tille at 2018-10-27T22:46:46Z
Fix URL for source download

- - - - -
9e1b7c89 by Andreas Tille at 2018-10-27T22:51:37Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+bioperl (1.7.2-3) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/copyright
+  * Remove trailing whitespace in debian/rules
+  * Fix Perl interpreter path
+  * Fix URL for source download
+
+ -- Andreas Tille <tille at debian.org>  Sun, 28 Oct 2018 00:46:56 +0200
+
 bioperl (1.7.2-2) unstable; urgency=medium
 
   * Team upload
@@ -87,7 +100,7 @@ bioperl (1.6.924-3) unstable; urgency=medium
 bioperl (1.6.924-2) unstable; urgency=medium
 
   * d/control: add perl-modules for perl 5.22 transition
-               (Closes: #790305). 
+               (Closes: #790305).
 
  -- Olivier Sallou <osallou at debian.org>  Mon, 29 Jun 2015 09:05:22 +0200
 
@@ -112,7 +125,7 @@ bioperl (1.6.922-1) unstable; urgency=low
   * New upstream release.
   * Replaces and Breaks grinder (<< 0.5.3-3~) because of overlaping contents.
     Closes: #722910
-  * Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore. 
+  * Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore.
 
  -- Charles Plessy <plessy at debian.org>  Sun, 22 Sep 2013 13:39:48 +0900
 
@@ -121,7 +134,7 @@ bioperl (1.6.920-1) unstable; urgency=low
   * New upstream release (Closes: #720776)
   * Adjusted Depends and Recommends (4 additions).
   * Removed patch ‘fix_berkeleydb3_temp_file_creation’ applied upstream.
-  * Use canonical VCS URLs. 
+  * Use canonical VCS URLs.
 
  -- Charles Plessy <plessy at debian.org>  Sun, 08 Sep 2013 20:56:00 +0900
 
@@ -139,7 +152,7 @@ bioperl (1.6.901-3) unstable; urgency=low
   * Team upload.
     [ Olivier Sallou ]
     + add patch fix_berkeleydb3_temp_file_creation (Closes: #661793).
-      Fixed upstream for next release. 
+      Fixed upstream for next release.
     * debian/control: update Standards version
     * debian/copyright: update Format to latest officiel URL v1.0
     * debian/patches/fix_examples_perl_location: fix wrong perl location
@@ -265,7 +278,7 @@ bioperl (1.6.0-1) experimental; urgency=low
       /usr/share/doc/bioperl.
   * debian/control:
     - fields values rewrapped to easily spot diffs in commit mails
-    - dropped B-D-I versioning on perl, since Etch already has a greater 
+    - dropped B-D-I versioning on perl, since Etch already has a greater
       version
     - Standards-Version bumped to 3.8.0 (no changes needed).
 
@@ -403,7 +416,7 @@ bioperl (0.7.0-1) unstable; urgency=low
 
 bioperl (0.05.1-3) unstable; urgency=low
 
-  * Fixed compliance with perl policy; closes: #95880, #95418 
+  * Fixed compliance with perl policy; closes: #95880, #95418
 
  -- Dr. Guenter Bechly <gbechly at debian.org>  Tue,  1 May 2001 08:13:09 +0200
 


=====================================
debian/compat
=====================================
@@ -1 +1 @@
-10
+11


=====================================
debian/control
=====================================
@@ -7,9 +7,9 @@ Uploaders: Charles Plessy <plessy at debian.org>,
 Section: science
 Testsuite: autopkgtest-pkg-perl
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
 # Unnecessary according to lintian, but building with sbuild shows the contrary.
-               libmodule-build-perl (>= 0.420000) | perl (<< 5.19.0),
+               libmodule-build-perl (>= 0.420000) | perl (<< 5.19.0)
 Build-Depends-Indep: perl,
                      rename,
                      libio-string-perl,
@@ -55,9 +55,9 @@ Build-Depends-Indep: perl,
                      libwww-perl,
 # Needed to avoid downloading DTDs during the tests and therefore fail when network is not available:
                      libxml-sax-expatxs-perl
-Standards-Version: 4.1.2
-Vcs-Browser: https://anonscm.debian.org/git/debian-med/bioperl.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/bioperl.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/bioperl
+Vcs-Git: https://salsa.debian.org/med-team/bioperl.git
 Homepage: http://www.bioperl.org/
 
 Package: bioperl


=====================================
debian/copyright
=====================================
@@ -1,5 +1,5 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Source: http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.923.tar.gz
+Source: https://metacpan.org/release/BioPerl
 
 Files: *
 Copyright: The Bioperl developers.
@@ -139,13 +139,13 @@ Comment:
     license, which means that you are not required to submit the code fixes, but in
     the spirit of making a better product we hope you'll contribute back to the
     community any insight or code improvements.
- . 
+ .
   * Please include the AUTHORS file and ascribe credit to the original BioPerl
     toolkit where appropriate.
- . 
+ .
   * If you are an academic and you use the software, please cite the article.
     See the BioPerl publications for a list of papers which describe components in
-    the toolkit. 
+    the toolkit.
 URL: see http://www.bioperl.org/wiki/Licensing_BioPerl
 
 Files: t/lib/Error.pm


=====================================
debian/rules
=====================================
@@ -22,7 +22,10 @@ override_dh_install:
 	chmod 644 debian/libbio-perl-perl/usr/share/perl5/Bio/DB/HIV/lanl-schema.xml
 
 override_dh_installchangelogs:
-	dh_installchangelogs Changes 
+	dh_installchangelogs Changes
 
 override_dh_installexamples:
 	dh_installexamples examples/*
+	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done



View it on GitLab: https://salsa.debian.org/med-team/bioperl/compare/47da525b82ad2ac904bc226167e8bcd86fde7d73...9e1b7c8965e703206db00a5f8cccf9d6deadfa8c

-- 
View it on GitLab: https://salsa.debian.org/med-team/bioperl/compare/47da525b82ad2ac904bc226167e8bcd86fde7d73...9e1b7c8965e703206db00a5f8cccf9d6deadfa8c
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