[med-svn] [Git][med-team/qiime][master] Remove more remainings of qiime1

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / qiime


Commits:
ab34735d by Andreas Tille at 2018-10-28T17:07:53Z
Remove more remainings of qiime1

- - - - -


2 changed files:

- − debian/qiime.1.ronn
- − debian/qiime.dirs


Changes:

=====================================
debian/qiime.1.ronn deleted
=====================================
@@ -1,73 +0,0 @@
-qiime(1) -- Quantitative Insights Into Microbial Ecology
-
-This is a short manpage for QIIME on Debian/Bio-Linux.
-You should refer to the main QIIME documentation at
-/usr/share/doc/qiime/html/index.html and also the QIIME section of the
-Bio-Linux tutorial at http://environmentalomics.org/bio-linux-training/.
-
-## INVOCATION:
-
-To run any QIIME command such as "validate_mapping_file.py":
-
- _$_ `qiime` validate_mapping_file [...]
-
-or just type 'qiime' to get a customised shell environment where all QIIME commands
-are available exactly as documented, ie:
-
- _$_ `qiime`
-
- _$ qiime >_ `validate_mapping_file.py` [...]
-
-## PARAMETERS FILE:
-
-For certain QIIME commands, you are asked to indicate where your QIIME
-parameters file is. You can find an example file in the location
-/usr/share/doc/qiime/qiime_parameters_example.txt but the recommendation
-as of QIIME 1.7.0 is to only set values that you want to override and to
-let QIIME pick defaults for the others.
-
-## QIIME CONFIGURATION:
-
-QIIME reads configuration information from the file specified by
-**$QIIME_CONFIG_FP** or by default from **/etc/qiime/qiime_config**.
-It is unlikely you will need to change the settings in this file,
-but if you do you should copy it as **.qiime_config** in your home directory.
-
-## GREENGENES DATA:
-
-The qiime-data package now provides copies of the Greengenes core alignment
-template plus the lanemask file in **/usr/share/qiime/data** but you still need
-to download some extra data to use QIIME properly.  Taxonomic databases are
-being updated all the time and you need to be sure which version you are
-using.  See the QIIME main docs for more info on what you need.
-
-## PROGRAMS INVOKED BY QIIME:
-
-QIIME calls many applications and libraries in the course of performing an
-analysis.  For consistency, it is important to know what versions were installed
-at the time of the analysis.  To obtain a complete report type
-
- `print_qiime_config_all`
-
-**NB:** The official release of QIIME stipulates very particular versions of all these
-programs in order to guarantee consistent results.  This version of QIIME uses updated
-versions that are packages in the Debian software repository.  If you want to obtain ressults
-consistent with the official QIIME pipeline then you need to install QIIME as set out on
-the main website.
-
-## UCLUST and USEARCH:
-
-You may install these manually if you want to use them, but as of QIIME 1.9
-all features should be available via the free SumaClust and vSearch programs.
-uClust and uSearch are not free software and come with usage restrictions
-for non-paying users.
-
-For more info, try running 'uclust' or 'usearch' at the QIIME prompt.
-
-## For more information about QIIME, please visit the home page at:
-
-    http://qiime.org
-
-## QIIME was packaged as part of the Bio-Linux project.
-
-    http://environmentalomics.org/bio-linux


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debian/qiime.dirs deleted
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@@ -1 +0,0 @@
-usr/lib/qiime/bin



View it on GitLab: https://salsa.debian.org/med-team/qiime/commit/ab34735db47e5102f44ff8b0809710b77dd67022

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