[med-svn] [Git][med-team/python-misopy][master] 12 commits: New upstream version 0.5.4+dfsg
Andreas Tille
gitlab at salsa.debian.org
Tue Oct 30 06:46:01 GMT 2018
Andreas Tille pushed to branch master at Debian Med / python-misopy
Commits:
a7cdbd7f by Andreas Tille at 2018-10-30T06:29:06Z
New upstream version 0.5.4+dfsg
- - - - -
94a191c3 by Andreas Tille at 2018-10-30T06:29:18Z
Update upstream source from tag 'upstream/0.5.4+dfsg'
Update to upstream version '0.5.4+dfsg'
with Debian dir 2040554d5bccc4ad79ec1ee73be487534b5c12d1
- - - - -
3b0dfc1b by Andreas Tille at 2018-10-30T06:29:18Z
New upstream version
- - - - -
06631d00 by Andreas Tille at 2018-10-30T06:29:18Z
debhelper 11
- - - - -
1c9d0507 by Andreas Tille at 2018-10-30T06:29:26Z
Point Vcs fields to salsa.debian.org
- - - - -
9a261341 by Andreas Tille at 2018-10-30T06:29:26Z
Standards-Version: 4.2.1
- - - - -
903e25ab by Andreas Tille at 2018-10-30T06:29:27Z
Secure URI in copyright format
- - - - -
4cf3e170 by Andreas Tille at 2018-10-30T06:29:27Z
Drop useless get-orig-source target
- - - - -
3b3167c0 by Andreas Tille at 2018-10-30T06:34:45Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
- - - - -
6676b0ce by Andreas Tille at 2018-10-30T06:34:45Z
Remove trailing whitespace in debian/rules
- - - - -
05b88cdd by Andreas Tille at 2018-10-30T06:34:45Z
Drop ancient X-Python-Version field
- - - - -
e5e50efb by Andreas Tille at 2018-10-30T06:45:04Z
Cleanup changelog from automatic changes which are not needed in not yet released package; Build-Depends: python3-setuptools
- - - - -
21 changed files:
- + MANIFEST.in
- PKG-INFO
- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/rules
- + misopy.egg-info/PKG-INFO
- + misopy.egg-info/SOURCES.txt
- + misopy.egg-info/dependency_links.txt
- + misopy.egg-info/entry_points.txt
- + misopy.egg-info/pbr.json
- + misopy.egg-info/requires.txt
- + misopy.egg-info/top_level.txt
- misopy/__init__.py
- misopy/credible_intervals.py
- misopy/run_events_analysis.py
- misopy/samples_utils.py
- pysplicing/src/miso.c
- + setup.cfg
- setup.py
Changes:
=====================================
MANIFEST.in
=====================================
@@ -0,0 +1,16 @@
+include pysplicing/include/*
+include pysplicing/src/f2c/*
+include pysplicing/src/lapack/*
+include misopy/settings/*
+include misopy/sashimi_plot/settings/*
+include misopy/sashimi_plot/test-data/*
+include misopy/sashimi_plot/test-data/bam-data/*
+include misopy/sashimi_plot/test-data/miso-data/*
+include misopy/sashimi_plot/test-data/miso-data/heartKOa/chr17/*
+include misopy/sashimi_plot/test-data/miso-data/heartKOb/chr17/*
+include misopy/sashimi_plot/test-data/miso-data/heartWT1/chr17/*
+include misopy/sashimi_plot/test-data/miso-data/heartWT2/chr17/*
+include misopy/gff-events/mm9/*
+include misopy/gff-events/mm9/genes/*
+include misopy/test-data/sam-data/*
+include misopy/test-data/se-counts/*
\ No newline at end of file
=====================================
PKG-INFO
=====================================
@@ -1,6 +1,6 @@
Metadata-Version: 1.1
Name: misopy
-Version: 0.5.3
+Version: 0.5.4
Summary: Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
Home-page: http://genes.mit.edu/burgelab/miso/
Author: Yarden Katz
=====================================
debian/changelog
=====================================
@@ -1,6 +1,6 @@
-python-misopy (0.5.3+dfsg-1) UNRELEASED; urgency=low
+python-misopy (0.5.4+dfsg-1) UNRELEASED; urgency=low
* Initial release (Closes: #nnnn)
* Not using internal f2c redistribution.
- -- Andreas Tille <tille at debian.org> Sat, 13 Aug 2016 08:37:34 +0200
+ -- Andreas Tille <tille at debian.org> Tue, 30 Oct 2018 07:34:46 +0100
=====================================
debian/compat
=====================================
@@ -1 +1 @@
-9
+11
=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Steffen Moeller <moeller at debian.org>,
Andreas Tille <tille at debian.org>
Section: python
Priority: optional
-Build-Depends: debhelper (>= 9~),
+Build-Depends: debhelper (>= 11~),
dh-python,
python-all-dev,
python3-all-dev,
@@ -15,13 +15,13 @@ Build-Depends: debhelper (>= 9~),
python3-pysam,
python3-scipy,
python3-matplotlib,
+ python3-setuptools,
samtools,
libf2c2-dev
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-misopy.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/python-misopy.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/python-misopy
+Vcs-Git: https://salsa.debian.org/med-team/python-misopy.git
Homepage: http://genes.mit.edu/burgelab/miso/
-X-Python-Version: >= 2.6
Package: python-misopy
Architecture: any
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: miso
Source: https://pypi.python.org/pypi/misopy
Files-Excluded: pysplicing/src/f2c
=====================================
debian/rules
=====================================
@@ -7,6 +7,7 @@ export PYBUILD_NAME=misopy
dh $@ --with python2,python3 --buildsystem=pybuild
override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
PATH=$(CURDIR)/debian/bin:$${PATH} \
PYBUILD_SYSTEM=custom \
PYBUILD_TEST_ARGS="\
@@ -18,6 +19,7 @@ override_dh_auto_test:
cd {build_dir} && \
PYTHONPATH={build_dir} python -m unittest discover -v" \
dh_auto_test --buildsystem=pybuild || true
+endif
override_dh_auto_install:
dh_auto_install
@@ -25,7 +27,5 @@ override_dh_auto_install:
override_dh_clean:
rm -rf tmp a.out
- dh_clean
+ dh_clean
-get-orig-source:
- uscan --verbose --force-download --repack --compression xz
=====================================
misopy.egg-info/PKG-INFO
=====================================
@@ -0,0 +1,21 @@
+Metadata-Version: 1.1
+Name: misopy
+Version: 0.5.4
+Summary: Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
+Home-page: http://genes.mit.edu/burgelab/miso/
+Author: Yarden Katz
+Author-email: yarden at mit.edu
+License: UNKNOWN
+Description: MISO (Mixture of Isoforms) is a probabilistic framework that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples. By modeling the generative process by which reads are produced from isoforms in RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.
+
+ MISO uses the inferred assignment of reads to isoforms to quantitate the abundances of the underlying set of alternative mRNA isoforms. Confidence intervals over estimates can be obtained, which quantify the reliability of the estimates.
+
+ Please see http://genes.mit.edu/burgelab/miso/docs/ for MISO manual and documentation.
+
+Keywords: bioinformatics,sequence analysis,alternative splicing,RNA-Seq,probabilistic models,bayesian
+Platform: ALL
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: C
+Classifier: Programming Language :: Python
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
=====================================
misopy.egg-info/SOURCES.txt
=====================================
@@ -0,0 +1,387 @@
+MANIFEST.in
+README
+setup.py
+misopy/Gene.py
+misopy/__init__.py
+misopy/as_events.py
+misopy/cluster_utils.py
+misopy/compare_miso.py
+misopy/credible_intervals.py
+misopy/exon_utils.py
+misopy/filter_events.py
+misopy/gff_utils.py
+misopy/hypothesis_test.py
+misopy/index_gff.py
+misopy/json_utils.py
+misopy/kde_subclass.py
+misopy/legacy_test_pysplicing.py
+misopy/misc_utils.py
+misopy/miso.py
+misopy/miso_db.py
+misopy/miso_pack.py
+misopy/miso_sampler.py
+misopy/miso_utils.py
+misopy/miso_zip.py
+misopy/module_availability.py
+misopy/parse_csv.py
+misopy/parse_gene.py
+misopy/pe_utils.py
+misopy/pickle_utils.py
+misopy/py2c_gene.py
+misopy/read_simulator.py
+misopy/reads_utils.py
+misopy/run_events_analysis.py
+misopy/run_miso.py
+misopy/sam_rpkm.py
+misopy/sam_to_bam.py
+misopy/sam_utils.py
+misopy/samples_utils.py
+misopy/settings.py
+misopy/summarize_miso.py
+misopy/test_cluster.py
+misopy/test_miso.py
+misopy.egg-info/PKG-INFO
+misopy.egg-info/SOURCES.txt
+misopy.egg-info/dependency_links.txt
+misopy.egg-info/entry_points.txt
+misopy.egg-info/pbr.json
+misopy.egg-info/requires.txt
+misopy.egg-info/top_level.txt
+misopy/gff-events/mm9/SE.mm9.gff
+misopy/gff-events/mm9/genes/Atp2b1.mm9.gff
+misopy/sashimi_plot/Sashimi.py
+misopy/sashimi_plot/__init__.py
+misopy/sashimi_plot/plot.py
+misopy/sashimi_plot/sashimi_plot.py
+misopy/sashimi_plot/plot_utils/__init__.py
+misopy/sashimi_plot/plot_utils/plot_gene.py
+misopy/sashimi_plot/plot_utils/plot_settings.py
+misopy/sashimi_plot/plot_utils/plotting.py
+misopy/sashimi_plot/plot_utils/samples_plotter.py
+misopy/sashimi_plot/settings/sashimi_plot_settings.txt
+misopy/sashimi_plot/test-data/events.gff
+misopy/sashimi_plot/test-data/bam-data/heartKOa.bam.bai
+misopy/sashimi_plot/test-data/bam-data/heartKOa.sorted.bam
+misopy/sashimi_plot/test-data/bam-data/heartKOa.sorted.bam.bai
+misopy/sashimi_plot/test-data/bam-data/heartKOb.sorted.bam
+misopy/sashimi_plot/test-data/bam-data/heartKOb.sorted.bam.bai
+misopy/sashimi_plot/test-data/bam-data/heartWT1.sorted.bam
+misopy/sashimi_plot/test-data/bam-data/heartWT1.sorted.bam.bai
+misopy/sashimi_plot/test-data/bam-data/heartWT2.sorted.bam
+misopy/sashimi_plot/test-data/bam-data/heartWT2.sorted.bam.bai
+misopy/sashimi_plot/test-data/miso-data/heartKOa/chr17/chr17:45816186:45816265:- at chr17:45815912:45815950:- at chr17:45814875:45814965:-.miso
+misopy/sashimi_plot/test-data/miso-data/heartKOb/chr17/chr17:45816186:45816265:- at chr17:45815912:45815950:- at chr17:45814875:45814965:-.miso
+misopy/sashimi_plot/test-data/miso-data/heartWT1/chr17/chr17:45816186:45816265:- at chr17:45815912:45815950:- at chr17:45814875:45814965:-.miso
+misopy/sashimi_plot/test-data/miso-data/heartWT2/chr17/chr17:45816186:45816265:- at chr17:45815912:45815950:- at chr17:45814875:45814965:-.miso
+misopy/settings/miso_settings.txt
+misopy/test-data/sam-data/c2c12.Atp2b1.sam
+pysplicing/include/f2c.h
+pysplicing/include/matrix.pmt
+pysplicing/include/pyerror.h
+pysplicing/include/pysplicing.h
+pysplicing/include/random.h
+pysplicing/include/splicing.h
+pysplicing/include/splicing_error.h
+pysplicing/include/splicing_lapack.h
+pysplicing/include/splicing_matrix.h
+pysplicing/include/splicing_matrix_pmt.h
+pysplicing/include/splicing_memory.h
+pysplicing/include/splicing_pmt.h
+pysplicing/include/splicing_pmt_off.h
+pysplicing/include/splicing_random.h
+pysplicing/include/splicing_vector.h
+pysplicing/include/splicing_vector_pmt.h
+pysplicing/include/vector.pmt
+pysplicing/pysplicing/__init__.py
+pysplicing/src/assignment.c
+pysplicing/src/blas.c
+pysplicing/src/complexity.c
+pysplicing/src/convert.c
+pysplicing/src/error.c
+pysplicing/src/fortran_stuff.c
+pysplicing/src/gff.c
+pysplicing/src/ident.c
+pysplicing/src/lapack.c
+pysplicing/src/lawson_hanson_nnls.c
+pysplicing/src/matrix.c
+pysplicing/src/memory.c
+pysplicing/src/miso.c
+pysplicing/src/miso_paired.c
+pysplicing/src/nnls.c
+pysplicing/src/pyconvert.c
+pysplicing/src/pyerror.c
+pysplicing/src/pyrandom.c
+pysplicing/src/pysplicing.c
+pysplicing/src/qsort.c
+pysplicing/src/qsort_r.c
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+pysplicing/src/solve.c
+pysplicing/src/strvector.c
+pysplicing/src/util.c
+pysplicing/src/vector.c
+pysplicing/src/f2c/Notice
+pysplicing/src/f2c/README
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+pysplicing/src/f2c/xsum0.out
+pysplicing/src/f2c/xwsne.c
+pysplicing/src/f2c/z_abs.c
+pysplicing/src/f2c/z_cos.c
+pysplicing/src/f2c/z_div.c
+pysplicing/src/f2c/z_exp.c
+pysplicing/src/f2c/z_log.c
+pysplicing/src/f2c/z_sin.c
+pysplicing/src/f2c/z_sqrt.c
+pysplicing/src/lapack/blas.inc
+pysplicing/src/lapack/dbdsdc.c
+pysplicing/src/lapack/dbdsqr.c
+pysplicing/src/lapack/dcopy.c
+pysplicing/src/lapack/ddot.c
+pysplicing/src/lapack/debug.h
+pysplicing/src/lapack/dgebd2.c
+pysplicing/src/lapack/dgebrd.c
+pysplicing/src/lapack/dgelq2.c
+pysplicing/src/lapack/dgelqf.c
+pysplicing/src/lapack/dgemm.c
+pysplicing/src/lapack/dgemv.c
+pysplicing/src/lapack/dgeqr2.c
+pysplicing/src/lapack/dgeqrf.c
+pysplicing/src/lapack/dger.c
+pysplicing/src/lapack/dgesdd.c
+pysplicing/src/lapack/disnan.c
+pysplicing/src/lapack/dlabrd.c
+pysplicing/src/lapack/dlacpy.c
+pysplicing/src/lapack/dlaed6.c
+pysplicing/src/lapack/dlaisnan.c
+pysplicing/src/lapack/dlamch.c
+pysplicing/src/lapack/dlamrg.c
+pysplicing/src/lapack/dlange.c
+pysplicing/src/lapack/dlanst.c
+pysplicing/src/lapack/dlapy2.c
+pysplicing/src/lapack/dlarf.c
+pysplicing/src/lapack/dlarfb.c
+pysplicing/src/lapack/dlarfg.c
+pysplicing/src/lapack/dlarft.c
+pysplicing/src/lapack/dlartg.c
+pysplicing/src/lapack/dlas2.c
+pysplicing/src/lapack/dlascl.c
+pysplicing/src/lapack/dlasd0.c
+pysplicing/src/lapack/dlasd1.c
+pysplicing/src/lapack/dlasd2.c
+pysplicing/src/lapack/dlasd3.c
+pysplicing/src/lapack/dlasd4.c
+pysplicing/src/lapack/dlasd5.c
+pysplicing/src/lapack/dlasd6.c
+pysplicing/src/lapack/dlasd7.c
+pysplicing/src/lapack/dlasd8.c
+pysplicing/src/lapack/dlasda.c
+pysplicing/src/lapack/dlasdq.c
+pysplicing/src/lapack/dlasdt.c
+pysplicing/src/lapack/dlaset.c
+pysplicing/src/lapack/dlasq1.c
+pysplicing/src/lapack/dlasq2.c
+pysplicing/src/lapack/dlasq3.c
+pysplicing/src/lapack/dlasq4.c
+pysplicing/src/lapack/dlasq5.c
+pysplicing/src/lapack/dlasq6.c
+pysplicing/src/lapack/dlasr.c
+pysplicing/src/lapack/dlasrt.c
+pysplicing/src/lapack/dlassq.c
+pysplicing/src/lapack/dlasv2.c
+pysplicing/src/lapack/dnrm2.c
+pysplicing/src/lapack/dorg2r.c
+pysplicing/src/lapack/dorgbr.c
+pysplicing/src/lapack/dorgl2.c
+pysplicing/src/lapack/dorglq.c
+pysplicing/src/lapack/dorgqr.c
+pysplicing/src/lapack/dorm2r.c
+pysplicing/src/lapack/dormbr.c
+pysplicing/src/lapack/dorml2.c
+pysplicing/src/lapack/dormlq.c
+pysplicing/src/lapack/dormqr.c
+pysplicing/src/lapack/drot.c
+pysplicing/src/lapack/dscal.c
+pysplicing/src/lapack/dswap.c
+pysplicing/src/lapack/dtrmm.c
+pysplicing/src/lapack/dtrmv.c
+pysplicing/src/lapack/ieeeck.c
+pysplicing/src/lapack/iladlc.c
+pysplicing/src/lapack/iladlr.c
+pysplicing/src/lapack/ilaenv.c
+pysplicing/src/lapack/iparmq.c
+pysplicing/src/lapack/lapack.inc
+pysplicing/src/lapack/len_trim.c
+pysplicing/src/lapack/lsame.c
+pysplicing/src/lapack/stat.h
+pysplicing/src/lapack/xerbla.c
\ No newline at end of file
=====================================
misopy.egg-info/dependency_links.txt
=====================================
@@ -0,0 +1 @@
+
=====================================
misopy.egg-info/entry_points.txt
=====================================
@@ -0,0 +1,18 @@
+[console_scripts]
+compare_miso = misopy.compare_miso:main
+exon_utils = misopy.exon_utils:main
+filter_events = misopy.filter_events:main
+index_gff = misopy.index_gff:main
+miso = misopy.miso:main
+miso_pack = misopy.miso_pack:main
+miso_zip = misopy.miso_zip:main
+module_availability = misopy.module_availability:main
+pe_utils = misopy.pe_utils:main
+plot.py = misopy.sashimi_plot.plot:main
+run_events_analysis.py = misopy.run_events_analysis:main
+run_miso.py = misopy.run_miso:main
+sam_to_bam = misopy.sam_to_bam:main
+sashimi_plot = misopy.sashimi_plot.sashimi_plot:main
+summarize_miso = misopy.summarize_miso:main
+test_miso = misopy.test_miso:main
+
=====================================
misopy.egg-info/pbr.json
=====================================
@@ -0,0 +1 @@
+{"is_release": false, "git_version": "b644df6"}
\ No newline at end of file
=====================================
misopy.egg-info/requires.txt
=====================================
@@ -0,0 +1,4 @@
+matplotlib
+numpy >= 1.5.0
+scipy >= 0.9.0
+pysam >= 0.6.0
=====================================
misopy.egg-info/top_level.txt
=====================================
@@ -0,0 +1,2 @@
+misopy
+pysplicing
=====================================
misopy/__init__.py
=====================================
@@ -1 +1 @@
-__version__ = "0.5.3"
+__version__ = "0.5.4"
=====================================
misopy/credible_intervals.py
=====================================
@@ -43,10 +43,10 @@ def compute_credible_intervals(samples, confidence_level=.95):
# compute the lower bound of the interval
# the lower bound is the (alpha/2)*n-th smallest sample, where n is the
# number of samples
- lower_bound_indx = round((alpha/2)*num_samples) - 1
+ lower_bound_indx = int(round((alpha/2)*num_samples)) - 1
# the upper bound is the (1-alpha/2)*n nth smallest sample, where n is
# the number of samples
- upper_bound_indx = round((1-alpha/2)*num_samples) - 1
+ upper_bound_indx = int(round((1-alpha/2)*num_samples)) - 1
assert(lower_bound_indx > 0)
assert(upper_bound_indx > 0)
# sort samples along first axis
=====================================
misopy/run_events_analysis.py
=====================================
@@ -168,11 +168,11 @@ def check_gff_and_bam(gff_dir, bam_filename, main_logger,
if bam_starts_with_chr != gff_starts_with_chr:
mismatch_found = True
if mismatch_found:
- miso_logger.warning("It looks like your GFF annotation file and your BAM " \
+ main_logger.warning("It looks like your GFF annotation file and your BAM " \
"file might not have matching headers (chromosome names.) " \
"If this is the case, your run will fail as no reads from " \
"the BAM could be matched up with your annotation.")
- miso_logger.warning("Please see:\n\t%s\n for more information." %(manual_url))
+ main_logger.warning("Please see:\n\t%s\n for more information." %(manual_url))
# Default: assume BAM starts with chr headers
chr_containing = "BAM file (%s)" %(bam_filename)
not_chr_containing = "GFF annotation (%s)" %(gff_dir)
@@ -180,16 +180,16 @@ def check_gff_and_bam(gff_dir, bam_filename, main_logger,
# BAM does not start with chr, GFF does
chr_containing, not_chr_containing = \
not_chr_containing, chr_containing
- miso_logger.warning("It looks like your %s contains \'chr\' chromosomes (UCSC-style) " \
+ main_logger.warning("It looks like your %s contains \'chr\' chromosomes (UCSC-style) " \
"while your %s does not." %(chr_containing,
not_chr_containing))
- miso_logger.warning("The first few BAM chromosomes were: %s" \
+ main_logger.warning("The first few BAM chromosomes were: %s" \
%(",".join(bam_chroms.keys())))
print "BAM references: "
print bam_file.references
- miso_logger.warning("The first few GFF chromosomes were: %s" \
+ main_logger.warning("The first few GFF chromosomes were: %s" \
%(",".join(gff_chroms.keys())))
- miso_logger.warning("Run is likely to fail or produce empty output. Proceeding " \
+ main_logger.warning("Run is likely to fail or produce empty output. Proceeding " \
"anyway...")
time.sleep(15)
=====================================
misopy/samples_utils.py
=====================================
@@ -303,7 +303,7 @@ def summarize_sampler_results(samples_dir, summary_filename,
counts_info = samples_results[5]
shape_len = len(shape(samples))
if shape_len < 2:
- print "WARNING: Skipping %s -- mishaped file" %(samples_filename)
+ print "WARNING: Skipping %s -- mishaped file" %(event_name)
continue
num_samples, num_isoforms = shape(samples)
output_fields = format_credible_intervals(event_name, samples)
=====================================
pysplicing/src/miso.c
=====================================
@@ -365,7 +365,6 @@ int splicing_drift_proposal_init(int noiso, int noChains,
MATRIX(*respsi, 0, j) = RNG_UNIF01();
MATRIX(*respsi, 1, j) = 1 - MATRIX(*respsi, j, 0);
MATRIX(*resalpha, 0, j) = 0.0;
- MATRIX(*resalpha, 1, j) = 0.0;
}
*ressigma = SIGMA;
}
=====================================
setup.cfg
=====================================
@@ -0,0 +1,5 @@
+[egg_info]
+tag_build =
+tag_date = 0
+tag_svn_revision = 0
+
=====================================
setup.py
=====================================
@@ -1,4 +1,4 @@
-from distutils.core import setup, Extension
+from setuptools import setup, Extension
import distutils.ccompiler
import glob
import os
@@ -74,7 +74,7 @@ for scheme in INSTALL_SCHEMES.values():
## Definition of the current version. This is defined here
## and then gets written to __init__.py in misopy.
##
-MISO_VERSION = "0.5.3"
+MISO_VERSION = "0.5.4"
##
## Generate a __version__.py attribute
View it on GitLab: https://salsa.debian.org/med-team/python-misopy/compare/e5908f4fe4952baad3469cd7cd8d3cc225fb2053...e5e50efbbd0f7f96c74e55c44f4deb61a027f489
--
View it on GitLab: https://salsa.debian.org/med-team/python-misopy/compare/e5908f4fe4952baad3469cd7cd8d3cc225fb2053...e5e50efbbd0f7f96c74e55c44f4deb61a027f489
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